Files in honzee/RNAseqCNVapp
A package for CNV analysis from RNA-seq data in B-cell acute lymphoblastic leukaemia
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/RNAseqCNV_wrappper.R
R/centromeres_hg19.R
R/centromeres_hg38.R
R/dbSNP_hg19.R
R/dbSNP_hg38.R
R/diploid_standard_hg19.R
R/diploid_standard_hg38.R
R/gen_fig_wrapper.R
R/gene_annot_hg19.R
R/gene_annot_hg38.R
R/launchApp.R
R/pseudoautosomal_regions_hg19.R
R/pseudoautosomal_regions_hg38.R
R/shinyAppServer.R
R/shinyAppUi.R
R/shiny_utils.R
R/sysdata.rda
R/user_defined_analysis/create_rf_models.R
R/user_defined_analysis/get_train_dat.R
R/user_defined_analysis/get_weights.R
README.md
README/figures/arm_level_1.png
README/figures/arm_level_2.png
README/figures/exp_arm.png
README/figures/export_tab.png
README/figures/input_tab.png
README/figures/main_fig_1.png
README/figures/main_fig_2.png
README/figures/manual_analysis_tab.png
README/figures/near_hap_adj.png
README/figures/near_hap_nonadj.png
RNAseqCNVapp.Rproj
data/centromeres_hg19.rda
data/centromeres_hg38.rda
data/dbSNP_hg19.rda
data/dbSNP_hg38.rda
data/diploid_standard_hg19.rda
data/diploid_standard_hg38.rda
data/gene_annot_hg19.rda
data/gene_annot_hg38.rda
data/pseudoautosomal_regions_hg19.rda
data/pseudoautosomal_regions_hg38.rda
inst/extdata/config_mock.txt
inst/extdata/diploid.HTSeq
inst/extdata/diploid.snv
inst/extdata/high_hyperdiploid.HTSeq
inst/extdata/high_hyperdiploid.snv
inst/extdata/low_hypodiploid.HTSeq
inst/extdata/low_hypodiploid.snv
inst/extdata/metadata_mock
inst/extdata/near_haploid.HTSeq
inst/extdata/near_haploid.snv
inst/shinyApp/app.R
man/RNAseqCNV_wrapper.Rd
man/centromeres_hg19.Rd
man/centromeres_hg38.Rd
man/dbSNP_hg19.Rd
man/dbSNP_hg38.Rd
man/diploid_standard_hg19.Rd
man/diploid_standard_hg38.Rd
man/gene_annot_hg19.Rd
man/gene_annot_hg38.Rd
man/get_norm_exp.Rd
man/launchApp.Rd
man/pseudoautosomal_regions_hg19.Rd
man/pseudoautosomal_regions_hg38.Rd
man/vcf_to_snv.Rd
man/weighted_quantile.Rd
