Man pages for honzee/RNAseqCNVapp
A package for CNV analysis from RNA-seq data in B-cell acute lymphoblastic leukaemia
| centromeres_hg19 | Centromeric regions for genome build hg19. |
| centromeres_hg38 | Centromeric regions for genome build hg38. |
| dbSNP_hg19 | Single nucleotide polymorphisms from dbSNP database. |
| dbSNP_hg38 | Single nucleotide polymorphisms from dbSNP database. |
| diploid_standard_hg19 | Diploid standard hg19. |
| diploid_standard_hg38 | Diploid standard hg38. |
| gene_annot_hg19 | Gene annotation build hg19. |
| gene_annot_hg38 | Gene annotation build hg38. |
| get_norm_exp | Importing packages |
| launchApp | launches the shinyAppDemo app |
| pseudoautosomal_regions_hg19 | Pseudoautosomal regions, genome hg19. |
| pseudoautosomal_regions_hg38 | Pseudoautosomal regions, genome hg38. |
| RNAseqCNV_wrapper | RNAseqCNV_wrapper |
| vcf_to_snv | Fucnction that converts vcf files to tabular input for CNV... |
| weighted_quantile | Function for calculating weighted quantiles |
