aee | Generate an inversed variance matrix from expression profile... |
boot.exphy | Bootstrapping expression phylogeny |
corrMatInv | Generate an inversed correlation matrix between expression... |
delta | Estimating delta values from a distance matrix. |
distances | Internal functions for estimating pair-wise expression... |
estomega | Estimation of over-dispersion parameter omega |
estomega.sample | Internal function for omega estimation in bootstrapping |
estParaGamma | Estimation of parameters of selection strength Gamma... |
estParaQ | Estimation of parameter Q from expression table |
estParaWBayesian | Bayesian estimation of expression conservation from previous... |
estVarCov | Expression variance-covariance matrix |
expdist | Expression distance matrix generated from a taxaExp class |
exptabTE | Expression level table from a taxaExp class |
gamma | Estimating gamma from taxaExp objects. |
genefilters | Filters for subsetting orthologous genes |
map | Map the expression distance onto a given tree topology |
nj | Neighbor-joining |
no0br | No zero branch length |
primatexp | taxaExp object created from expression data of primate... |
print.taxaExp | Consice display of a taxaExp object |
print.taxonExp | Concise display of a taxonExp object |
TEconstruct | Construct a taxaExp object. |
tetraexp | taxaExp object created from expression data |
TreeExp-package | the TreeExp package for phylogenetic analysis of expression... |
trees | species trees and ultrametric time trees |
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