ggalt: Extra Coordinate Systems, 'Geoms', Statistical Transformations, Scales and Fonts for 'ggplot2'

geom_xspline

R Documentation

Connect control points/observations with an X-spline

Description

Draw an X-spline, a curve drawn relative to control points/observations. Patterned after geom_line in that it orders the points by x first before computing the splines.

Usage

geom_xspline(
  mapping = NULL,
  data = NULL,
  stat = "xspline",
  position = "identity",
  na.rm = TRUE,
  show.legend = NA,
  inherit.aes = TRUE,
  spline_shape = -0.25,
  open = TRUE,
  rep_ends = TRUE,
  ...
)

stat_xspline(
  mapping = NULL,
  data = NULL,
  geom = "line",
  position = "identity",
  na.rm = TRUE,
  show.legend = NA,
  inherit.aes = TRUE,
  spline_shape = -0.25,
  open = TRUE,
  rep_ends = TRUE,
  ...
)

Arguments

`mapping`	Set of aesthetic mappings created by `aes()`. If specified and `inherit.aes = TRUE` (the default), it is combined with the default mapping at the top level of the plot. You must supply `mapping` if there is no plot mapping.
`data`	The data to be displayed in this layer. There are three options: If `NULL`, the default, the data is inherited from the plot data as specified in the call to `ggplot()`. A `data.frame`, or other object, will override the plot data. All objects will be fortified to produce a data frame. See `fortify()` for which variables will be created. A `function` will be called with a single argument, the plot data. The return value must be a `data.frame`, and will be used as the layer data. A `function` can be created from a `formula` (e.g. `~ head(.x, 10)`).
`position`	Position adjustment, either as a string naming the adjustment (e.g. `"jitter"` to use `position_jitter`), or the result of a call to a position adjustment function. Use the latter if you need to change the settings of the adjustment.
`na.rm`	If `FALSE`, the default, missing values are removed with a warning. If `TRUE`, missing values are silently removed.
`show.legend`	logical. Should this layer be included in the legends? `NA`, the default, includes if any aesthetics are mapped. `FALSE` never includes, and `TRUE` always includes. It can also be a named logical vector to finely select the aesthetics to display.
`inherit.aes`	If `FALSE`, overrides the default aesthetics, rather than combining with them. This is most useful for helper functions that define both data and aesthetics and shouldn't inherit behaviour from the default plot specification, e.g. `borders()`.
`spline_shape`	A numeric vector of values between -1 and 1, which control the shape of the spline relative to the control points.
`open`	A logical value indicating whether the spline is an open or a closed shape.
`rep_ends`	For open X-splines, a logical value indicating whether the first and last control points should be replicated for drawing the curve. Ignored for closed X-splines.
`...`	Other arguments passed on to `layer()`. These are often aesthetics, used to set an aesthetic to a fixed value, like `colour = "red"` or `size = 3`. They may also be parameters to the paired geom/stat.
`geom, stat`	Use to override the default connection between `geom_xspline` and `stat_xspline`.

Details

A sample of the output from geom_xspline():

Figure: geomxspline01.png

An X-spline is a line drawn relative to control points. For each control point, the line may pass through (interpolate) the control point or it may only approach (approximate) the control point; the behaviour is determined by a shape parameter for each control point.

If the shape parameter is greater than zero, the spline approximates the control points (and is very similar to a cubic B-spline when the shape is 1). If the shape parameter is less than zero, the spline interpolates the control points (and is very similar to a Catmull-Rom spline when the shape is -1). If the shape parameter is 0, the spline forms a sharp corner at that control point.

For open X-splines, the start and end control points must have a shape of 0 (and non-zero values are silently converted to zero).

For open X-splines, by default the start and end control points are replicated before the curve is drawn. A curve is drawn between (interpolating or approximating) the second and third of each set of four control points, so this default behaviour ensures that the resulting curve starts at the first control point you have specified and ends at the last control point. The default behaviour can be turned off via the repEnds argument.

Aesthetics

geom_xspline understands the following aesthetics (required aesthetics are in bold):

x
y
alpha
color
linetype
size

Computed variables

References

Blanc, C. and Schlick, C. (1995), "X-splines : A Spline Model Designed for the End User", in Proceedings of SIGGRAPH 95, pp. 377-386. http://dept-info.labri.fr/~schlick/DOC/sig1.html

Examples

set.seed(1492)
dat <- data.frame(x=c(1:10, 1:10, 1:10),
                  y=c(sample(15:30, 10), 2*sample(15:30, 10),
                      3*sample(15:30, 10)),
                  group=factor(c(rep(1, 10), rep(2, 10), rep(3, 10)))
)

ggplot(dat, aes(x, y, group=group, color=group)) +
  geom_point() +
  geom_line()

ggplot(dat, aes(x, y, group=group, color=factor(group))) +
  geom_point() +
  geom_line() +
  geom_smooth(se=FALSE, linetype="dashed", size=0.5)

ggplot(dat, aes(x, y, group=group, color=factor(group))) +
  geom_point(color="black") +
  geom_smooth(se=FALSE, linetype="dashed", size=0.5) +
  geom_xspline(size=0.5)

ggplot(dat, aes(x, y, group=group, color=factor(group))) +
  geom_point(color="black") +
  geom_smooth(se=FALSE, linetype="dashed", size=0.5) +
  geom_xspline(spline_shape=-0.4, size=0.5)

ggplot(dat, aes(x, y, group=group, color=factor(group))) +
  geom_point(color="black") +
  geom_smooth(se=FALSE, linetype="dashed", size=0.5) +
  geom_xspline(spline_shape=0.4, size=0.5)

ggplot(dat, aes(x, y, group=group, color=factor(group))) +
  geom_point(color="black") +
  geom_smooth(se=FALSE, linetype="dashed", size=0.5) +
  geom_xspline(spline_shape=1, size=0.5)

ggplot(dat, aes(x, y, group=group, color=factor(group))) +
  geom_point(color="black") +
  geom_smooth(se=FALSE, linetype="dashed", size=0.5) +
  geom_xspline(spline_shape=0, size=0.5)

ggplot(dat, aes(x, y, group=group, color=factor(group))) +
  geom_point(color="black") +
  geom_smooth(se=FALSE, linetype="dashed", size=0.5) +
  geom_xspline(spline_shape=-1, size=0.5)

hrbrmstr/ggalt documentation built on May 1, 2023, 7:36 a.m.