summary.atlasqtl: Summary function for S3 class "atlasqtl"

In hruffieux/atlasqtl: Flexible sparse regression for hierarchically-related responses using annealed variational inference

Summary function for S3 class "atlasqtl"

Description

This function provides functionality for printing a basic summary of the atlasqtl posterior output.

Usage

## S3 method for class 'atlasqtl'
summary(object, thres, fdr_adjust = FALSE, full_summary = TRUE, ...)

Arguments

object	an object with S3 class "atlasqtl"
thres	threshold to be applied on the posterior probabilities of association (PPI) to report associations (default is 0.5, for the Median Probability Model).
fdr_adjust	if TRUE the threshold is applied on FDR estimates computed from the "atlasqtl" posterior probabilities of association, otherwise it is directly applied on the posterior probabilities of association (default is FALSE).
full_summary	whether or not to print a detailed summary. Default is TRUE.
...	additional arguments affecting the summary produced.

See Also

atlasqtl, plot.atlasqtl, print.atlasqtl, assign_bFDR

hruffieux/atlasqtl documentation built on April 12, 2025, 12:54 p.m.