Man pages for huanglu2018/tSTR
functions used in gtex2str project
| bed_overlap | Applied to check the distance between each STR site and... |
| cross_lm | cross_lm uses the variables from two data.frame and run... |
| cross_lm_with_cov | cross_lm uses the variables from two data.frame and run... |
| dedup_by_callrate | When a dataframe with characteristics from same inividuals... |
| dsg_filter_callrate | Filter dosaeg dataframe by call rate |
| fq_avrage_readlen | detect read length of fastq files, return the mean length of... |
| gather_dsg_DF | Gather dosage information to a dataframe from a directory... |
| get_correspond_sample_info | Function used to map GTEx v7 SRR id(s) from RNAseq to its... |
| get_sumabsdsg | For each individual, summarize loci infomation (DSGsum,... |
| lm_plot | Title |
| lm_plot_covAgeGender | multivariate linear regression using gender and age as... |
| shorten_TCGA_id | used to conveniently cut TCGA sample IDs |
| str_somatic_vs_germline | used to analysis the str profile, compare them to the... |
| vcf2GT | extract infomation of STR from gangSTR vcfs |
