get_correspond_sample_info: Function used to map GTEx v7 SRR id(s) from RNAseq to its...
In huanglu2018/tSTR: functions used in gtex2str project
Description
Usage
Arguments
Value
Examples
View source: R/get_correspond_sample_info.R
Description
Function used to map GTEx v7 SRR id(s) from RNAseq to its tissue part, WGS SRR id and individual id
Usage
1
get_correspond_sample_info(inSRR)
Arguments
inSRR
one or a list of GTEx RNAseq SRR id
outdf
a dataframe idicating the mapping result
Value
a dataframe containing columns:individual,RNAseq_run,RNAseq_sample,RNAseq_tissue,WGS_run,WGS_sample,WGS_tissue
Examples
1
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5
6
inSRR:
c("SRR598300")
out_df:
individual RNAseq_run RNAseq_sample RNAseq_tissue WGS_run WGS_sample WGS_tissue
GTEX-PX3G SRR598300 GTEX-PX3G-0006-SM-2I3E4 Whole Blood SRR3478911 GTEX-PX3G-0004-SM-5JK53 Whole Blood
huanglu2018/tSTR documentation built on Feb. 25, 2022, 5:39 a.m.
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Description Usage Arguments Value Examples
View source: R/get_correspond_sample_info.R
Description
Function used to map GTEx v7 SRR id(s) from RNAseq to its tissue part, WGS SRR id and individual id
Usage
1 | get_correspond_sample_info(inSRR)
|
Arguments
inSRR |
one or a list of GTEx RNAseq SRR id |
outdf |
a dataframe idicating the mapping result |
Value
a dataframe containing columns:individual,RNAseq_run,RNAseq_sample,RNAseq_tissue,WGS_run,WGS_sample,WGS_tissue
Examples
1 2 3 4 5 6 | inSRR:
c("SRR598300")
out_df:
individual RNAseq_run RNAseq_sample RNAseq_tissue WGS_run WGS_sample WGS_tissue
GTEX-PX3G SRR598300 GTEX-PX3G-0006-SM-2I3E4 Whole Blood SRR3478911 GTEX-PX3G-0004-SM-5JK53 Whole Blood
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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