trainDataProc: trainDataProc

In huangwb8/GSClassifier: Gene Signature Classifier

trainDataProc

Description

Binary data preprocessing based on expression matrix and real clustering

Usage

trainDataProc(
  Xmat,
  Yvec,
  geneSet,
  subtype = 1,
  ptail = 0.5,
  breakVec = c(0, 0.25, 0.5, 0.75, 1)
)

Arguments

Xmat	Matrix of gene expression, samples in columns, genes in rows
Yvec	Vector of phenotype, strings, 1, 2, etc
geneSet	A list of genes for classification
subtype	cluster name, string '1', as in Yvec
ptail	Binary phenotype vector.
breakVec	vector of break points, used to bin expression data

Value

List of Xbin and Ybin, the binned, subset, and binarized values.

huangwb8/GSClassifier documentation built on July 12, 2024, 5:10 p.m.