huatengh/Classiphy: Classify gene trees basing on the processes generating species-tree gene-tree discordance

R package to run CLASSIPHY, a simulation-based method to classifying loci based on the biological processes that known to produce gene tree and species tree discord. Specifically, this method uses multiple summary statistics in a machine-learning framework to distinguish sets of trees that were produced by ILS versus HGT.

Getting started

Package details

AuthorHuateng Huang, Jeet Sukumaran. L. Lacey Knowles
MaintainerHuateng Huang <huatengh@umich.edu>
LicenseBSD/MIT
Version0.1.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("huatengh/Classiphy")
huatengh/Classiphy documentation built on May 21, 2019, 7:53 a.m.