create_condaenv_seuratextend: Create the 'seuratextend' Conda Environment

In huayc09/SeuratExtend: SeuratExtend

Create the 'seuratextend' Conda Environment

Description

Initializes a Conda environment named 'seuratextend' which includes all necessary Python packages for running 'scVelo', 'Palantir', and 'CellRank' via 'SeuratExtend'. This function is ideal for users setting up their analytical environment for the first time or those who need to ensure they have a compatible environment setup.

Usage

create_condaenv_seuratextend()

Details

When you run functions from 'SeuratExtend' that require Python integrations, such as 'scVelo', 'Palantir', or 'CellRank', you might need a specific set of Python packages installed. This function facilitates the setup of a Conda environment specifically tailored for these tools, managed through 'reticulate'. The environment setup is automatic and checks your operating system to configure appropriately. It is supported on Windows, macOS, and Linux (Ubuntu 20.04), ensuring broad compatibility and ease of setup.

Value

Does not return any value; it creates and configures a new Conda environment.

Examples

## Not run: 
# To manually create the 'seuratextend' Conda environment, execute:
create_condaenv_seuratextend()

## End(Not run)

huayc09/SeuratExtend documentation built on July 15, 2024, 6:22 p.m.