writeCWL | R Documentation |
write 'cwlProcess' to cwl and yml.
writeCWL( cwl, prefix = deparse(substitute(cwl)), outdir = tempfile(), docker = TRUE, libPaths = TRUE, ... )
cwl |
A 'cwlProcess' or 'cwlWorkflow' object. |
prefix |
The prefix of '.cwl' and '.yml' files to be generated. |
outdir |
The output directory for the '.cwl' and '.yml' files. |
docker |
Whether to use docker. |
libPaths |
Whether to add local R libaray paths to R script. |
... |
Other options from 'yaml::write_yaml'. |
A CWL file and A YML file.
input1 <- InputParam(id = "sth") echo <- cwlProcess(baseCommand = "echo", inputs = InputParamList(input1)) writeCWL(echo)
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