tree.builder | R Documentation |
This function estimates a Spearman's correlation matrix, an abs(distance matrix), a hclust tree, a PCA from the correlation matrix, and numerous estimates of the effective number of variables in a data set (Me)
tree.builder(
wdata,
cor_method = "spearman",
dist_method = "R",
hclust_meth = "complete",
cmat = NULL
)
wdata |
a data.frame of the variable data used to build your cormat and hclust tree, the variables should be in columns, samples in rows. |
cor_method |
the correlation method used to construct the correlation matrix |
dist_method |
the distance method to generate the distance matrix |
hclust_meth |
the clustering method used by hclust |
cmat |
a correlation matrix you can pass to the function, which will skip the generation of a new matrix. |
tree.builder()
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