marker_tag_plot: Plot marker tag detections from Oregon RFID antenna readers

View source: R/marker_tag_plot.R

marker_tag_plotR Documentation

Plot marker tag detections from Oregon RFID antenna readers

Description

Creates a time series plot containing only detection data from a user-specified marker tag (unique tag number).

Usage

marker_tag_plot(x, tag, gap)

Arguments

x

antenna data compiled using import_ORFID or join_multireader_data.

tag

marker tag identification (character object).

gap

minimum time gap in seconds between detections (optional).

Details

Creates a plot object displaying marker tag detections. If a minimum time gap is specified, time gaps greater than the minimum specified are highlighted in red. This allows the user to identify periods when marker tags were not being detected as frequently as expected.

Value

Returns a ggplot2 object. If the plot is saved as a named object, ggplot2 functions, including theme commands can be used to customize plot aesthetics, including axis labels, grid lines, etc.

Author(s)

Hugo Marques <biohmarques@gmail.com>

See Also

import_ORFID for importing data files from Oregon RFID ORMR and ORSR antenna readers. join_multireader_data for combining data from Oregon RFID ORMR and ORSR antenna readers into a multi-reader array.

Examples

# Create a list containing compiled reader data:
readers <- list(reader_1, reader_2, reader_3)

# Join data into a multi-reader array:
PIT_data <- join_multireader_data(readers)

# Plot marker tag data and highlight gaps greater than 10 minutes.
marker_tag_plot(PIT_data, "0000_000000004978", gap = 600)

hugo-marques/ORFID documentation built on Jan. 10, 2023, 6:26 a.m.