Description Usage Arguments Value See Also Examples
Update a previous SSDM with new occurrence data. The function takes as inputs updated or new occurrence data from one species, previous environmental variables, and an S4 Stacked.SDM class object containing a previously built SSDM.
1 2 3 4 5 |
object |
Stacked.SDM. The previously built SSDM. |
Occurrences |
data frame. New or updated occurrence table (can be
processed first by |
Env |
raster object. Environment raster object (can be processed first by
|
Xcol |
character. Name of the column in the occurrence table containing Latitude or X coordinates. |
Ycol |
character. Name of the column in the occurrence table containing Longitude or Y coordinates. |
Pcol |
character. Name of the column in the occurrence table specifying whether a line is a presence or an absence. A value of 1 is presence and value of 0 is absence. If NULL presence-only dataset is assumed. |
Spname |
character. Name of the new or updated species. |
name |
character. Optional name given to the final SSDM produced, by default it's the name of the previous SSDM. |
save |
logical. If set to true, the model is automatically saved. |
path |
character. Name of the path to the directory to contain the saved SSDM. |
thresh |
numeric. A single integer value representing the number of equal
interval threshold values between 0 and 1 (see
|
tmp |
logical. If set to true, the habitat suitability map of each
algorithm is saved in a temporary file to release memory. But beware: if you
close R, temporary files will be deleted To avoid any loss you can save
your model with |
verbose |
logical. If set to true, allows the function to print text in the console. |
GUI |
logical. Don't take that argument into account (parameter for the user interface). |
folder_tmp |
character. carpeta temporal para el ENV. |
... |
additional parameters for the algorithm modelling function (see details below). |
an S4 Stacked.SDM class object viewable with the
plot.model
function.
stack_modelling
to build SSDMs.
1 2 3 4 | ## Not run:
update(stack, Occurrences, Env, Spname = 'NewSpecie')
## End(Not run)
|
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