merge_cpgs: Create in silico merged bulk profiles from single-cell files

Description Usage Arguments Details Value

View source: R/scMeth_functions.R

Description

Create in silico merged bulk profiles from single-cell files

Usage

1
merge_cpgs(cpg_all, cluster_assignments, desired_cluster)

Arguments

cpg_all

The list containing all CpG calls in data.frame format. Required.

cluster_assignments

The cluster_assignments outputed from cluster_dissimilarity(). Required

desired_cluster

The number desired from the input cluster assignments. Required

Details

Uses the bsseq package to perform in silico merging of single-cell CpG calls. Requires the bsseq R package to be installed

Value

a BSmooth object ready for smoothing


hui-tony-zk/PDclust documentation built on Aug. 7, 2018, 7:03 p.m.