merge_cpgs: Create in silico merged bulk profiles from single-cell files

In hui-tony-zk/pairwiseMethyl: Pairwise Comparisons For Single-cell DNA Methylation Data

Description

Create in silico merged bulk profiles from single-cell files

Usage

merge_cpgs(cpg_all, cluster_assignments, desired_cluster)

Arguments

cpg_all	The list containing all CpG calls in data.frame format. Required.
cluster_assignments	The cluster_assignments outputed from cluster_dissimilarity(). Required
desired_cluster	The number desired from the input cluster assignments. Required

Details

Uses the bsseq package to perform in silico merging of single-cell CpG calls. Requires the bsseq R package to be installed

Value

a BSmooth object ready for smoothing

hui-tony-zk/pairwiseMethyl documentation built on May 3, 2019, 5:18 p.m.