Files in huishenlab/bisplotti
Plotting package for bisulfite sequencing data
.Rbuildignore
.Rinstignore
.gitignore
DESCRIPTION
LICENSE
Makefile
NAMESPACE
NEWS.md
R/bisplotti.R
R/data.R
R/generics.R
R/meth1DDensity.R
R/meth2DDensity.R
R/multiscalePlot.R
R/plotEpibed.R
R/tabulateEpibed.R
R/utils.R
README.md
data/datalist
data/hg19.gr.rda
data/hg38.gr.rda
data/mm10.gr.rda
data/mm9.gr.rda
inst/doc/bisplotti.md
inst/doc/figure/meth1d-1.png
inst/doc/figure/meth2d-1.png
inst/doc/figure/multiscale-1.png
inst/doc/figure/plotEpiread-1.png
inst/doc/figure/plotEpiread-2.png
inst/extdata/Heyn_2012_100yr_subset_6.0.bed.gz
inst/extdata/Heyn_2012_100yr_subset_6.1.bed.gz
inst/extdata/Heyn_2012_100yr_subset_6.2.bed.gz
inst/extdata/Heyn_2012_100yr_subset_6.3.bed.gz
inst/extdata/Heyn_2012_100yr_subset_6.4.bed.gz
inst/extdata/Heyn_2012_100yr_subset_6.5.bed.gz
inst/extdata/Heyn_2012_100yr_subset_6.6.bed.gz
inst/extdata/Heyn_2012_100yr_subset_6.7.bed.gz
inst/extdata/Heyn_2012_100yr_subset_6.8.bed.gz
inst/extdata/Heyn_2012_100yr_subset_6.9.bed.gz
inst/extdata/Heyn_2012_100yr_subset_7.0.bed.gz
inst/extdata/config_example.yaml
inst/scripts/create_species_seqlengths_granges.R
man/averagePerBin.Rd
man/averagePerBinBSseqLike.Rd
man/figures/bisplotti_bg.png
man/figures/epistate_test_plot.png
man/figures/example_multiscale_plot_chr16_tcell_new_old.png
man/getSeqLengths.Rd
man/hg19.gr.Rd
man/hg38.gr.Rd
man/mergeMCols.Rd
man/meth1DDensity.Rd
man/meth2DDensity.Rd
man/mm10.gr.Rd
man/mm9.gr.Rd
man/multiscaleGroupAverage.Rd
man/multiscaleMethylationPlot.Rd
man/plotEpibed.Rd
man/tabulateEpibed.Rd
tests/testthat.R
tests/testthat/helper.R
tests/testthat/test-something.R
vignettes/bisplotti.Rmd
vignettes/figure/meth1d-1.png
vignettes/figure/meth2d-1.png
vignettes/figure/multiscale-1.png
vignettes/figure/plotEpiread-1.png
vignettes/figure/plotEpiread-2.png
