mergeMCols: Merge metadata columns of two GRanges

In huishenlab/bisplotti: Plotting package for bisulfite sequencing data

Merge metadata columns of two GRanges

Description

Merges mcols(gr2) into mcols(gr1). NA's are set for rows that occur in one GRanges but not the other. Once merged, the output GRanges will be sorted.

Usage

mergeMCols(gr1, gr2, append.gr1 = "_1", append.gr2 = "_2")

Arguments

gr1	GRanges to merge metadata into
gr2	GRanges with data to be merged
append.gr1	String to append to gr1 columns that share names with gr2 (default: "_1")
append.gr2	String to append to gr2 columns that share names with gr1 (default: "_2")

Value

GRanges

Examples

gr1 <- GRanges(seqnames = "chr2", ranges = IRanges(103, 106), strand = "+", score = 5L, GC = 0.45)
gr2 <- GRanges(
    seqnames = c("chr1", "chr2"),
    ranges = IRanges(c(107, 113), width = 3),
    strand = c("+", "-"),
    score = 3:4, GC = c(0.3, 0.5))
gr3 <- mergeMCols(gr1, gr2)

huishenlab/bisplotti documentation built on Sept. 20, 2023, 10:13 p.m.