Files in hummelma/TEQC
Quality control for target capture experiments
DESCRIPTION
NAMESPACE
NEWS
R/TEQCreport.R
R/chrom.barplot.R
R/coverage.GC.R
R/coverage.correlation.R
R/coverage.density.R
R/coverage.hist.R
R/coverage.plot.R
R/coverage.target.R
R/coverage.targetlength.plot.R
R/coverage.uniformity.R
R/covered.k.R
R/duplicates.barplot.R
R/fraction.reads.target.R
R/fraction.target.R
R/get.baits.R
R/get.reads.R
R/get.targets.R
R/insert.size.hist.R
R/make.wigfiles.R
R/multiTEQCreport.R
R/myreduce.R
R/offsetfun.R
R/reads2pairs.R
R/readsPerTarget.R
R/zzz.R
inst/CITATION
inst/extdata/ExampleSet_Baits.txt
inst/extdata/ExampleSet_Reads.bed
inst/extdata/ExampleSet_Targets.bed
inst/template/0000-Header.html
inst/template/1000-Overview.html
inst/template/1001-Pairedend.html
inst/template/2000-SpeciEnrichment.html
inst/template/2001-SpeciEnrichment.html
inst/template/3000-Coverage.html
inst/template/4000-CoverageUniformity.html
inst/template/5000-CoverageLength.html
inst/template/6000-CoverageGC.html
inst/template/7000-Wiggle.html
inst/template/8000-Duplicates.html
inst/template/8001-Duplicates.html
inst/template/9999-Footer.html
inst/template/QA.css
inst/template/image/bioclogo-small.jpg
inst/templateMulti/0000-Header.html
inst/templateMulti/1000-Overview.html
inst/templateMulti/2000-Specificity.html
inst/templateMulti/3000-TargetCoverage.html
inst/templateMulti/4000-Sensitivity.html
inst/templateMulti/5000-Uniformity.html
inst/templateMulti/6000-Correlation.html
inst/templateMulti/9999-Footer.html
man/TEQCreport.Rd
man/chrom.barplot.Rd
man/coverage.GC.Rd
man/coverage.correlation.Rd
man/coverage.density.Rd
man/coverage.hist.Rd
man/coverage.plot.Rd
man/coverage.target.Rd
man/coverage.targetlength.plot.Rd
man/coverage.uniformity.Rd
man/covered.k.Rd
man/duplicates.barplot.Rd
man/fraction.reads.target.Rd
man/fraction.target.Rd
man/get.baits.Rd
man/get.reads.Rd
man/get.targets.Rd
man/insert.size.hist.Rd
man/make.wigfiles.Rd
man/multiTEQCreport.Rd
man/reads2pairs.Rd
man/readsPerTarget.Rd
vignettes/TEQC.Rnw
