Man pages for hummelma/TEQC
Quality control for target capture experiments
| chrom.barplot | Reads per chromosome barplot |
| coverage.correlation | Coverage correlation plot |
| coverage.density | Coverage density plot |
| coverage.GC | Bait coverage versus GC content plot |
| coverage.hist | Coverage histogram |
| coverage.plot | Coverage versus base position plot |
| coverage.target | Calculates read coverage |
| coverage.targetlength.plot | Number of reads or average coverage versus target length... |
| coverage.uniformity | Coverage uniformity plot |
| covered.k | Target capture sensitivity |
| duplicates.barplot | Read duplicates barplot |
| fraction.reads.target | Target capture specificity |
| fraction.target | Fraction of the target within the genome |
| get.baits | Read capture hybridization probe positions |
| get.reads | Read genomic positions of sequencing data |
| get.targets | Read capture target positions |
| insert.size.hist | Insert sizes histogram |
| make.wigfiles | Creates wiggle files with per-base coverages |
| multiTEQCreport | Creates an html report for multiple samples |
| reads2pairs | Merges reads to read pairs |
| readsPerTarget | Numbers of reads per target |
| TEQCreport | Creates an html report |
