Files in hwang655/HUG
Dependent Graphical Model Estimation

DESCRIPTION

NAMESPACE

R/Functions_Display.r R/Functions_GE.r R/Functions_GLMM.r R/Functions_Graph.r R/Functions_IntMatrixGraph.r R/Functions_Simulate.r README.md

build/partial.rdb

data/Gierahn2017_raw.rData

data/genes_Velmeshev_4341_5cluster.rData

data/genes_Velmeshev_5278_5cluster.rData

data/genes_Velmeshev_5531_5cluster.rData

data/genes_Velmeshev_5958_5cluster.rData

data/pathwayCommons12_catalysis-precedes.rData

data/pathwayCommons12_controls-expression-of.rData

data/relation_12.rData

examples/demo.r man/GLMGraph.Rd man/GraphAcc.Rd man/HUG-package.Rd man/MHurdGraph.Rd man/MPoisGraph.Rd man/PlotGraphs.Rd man/hugeGraph.Rd man/rMVH.Rd man/rMVP.Rd scripts/ImportData.Rmd

scripts/demonstrate the results/.DS_Store

scripts/demonstrate the results/SFARI-Gene_README.txt

scripts/demonstrate the results/SFARI-Gene_genes_05-19-2020release_06-06-2020export.csv

scripts/demonstrate the results/edge found/.DS_Store

scripts/demonstrate the results/edge found/catalysis precedes all ebic edges/4341_velmeshev_control/dep_hurd_opt_graphs_4341_catalysis-precedes_glasso0.7_814edges.rData

scripts/demonstrate the results/edge found/catalysis precedes all ebic edges/4341_velmeshev_control/dep_pois_opt_graphs_4341_catalysis-precedes_glasso0.7_653edges.rData

scripts/demonstrate the results/edge found/catalysis precedes all ebic edges/4341_velmeshev_control/genes1500_genes_Velmeshev_4341_5cluster_catalysis-precedes.rData

scripts/demonstrate the results/edge found/catalysis precedes all ebic edges/4341_velmeshev_control/pois_opt_graphs_4341_catalysis-precedes_glasso0.7_3737edges.rData

scripts/demonstrate the results/edge found/catalysis precedes all ebic edges/5278_velmeshev_ASD/dep_hurd_opt_graphs_5278_catalysis-precedes_glasso0.7_1007edges.rData

scripts/demonstrate the results/edge found/catalysis precedes all ebic edges/5278_velmeshev_ASD/dep_pois_opt_graphs_5278_catalysis-precedes_glasso0.7_831edges.rData

scripts/demonstrate the results/edge found/catalysis precedes all ebic edges/5278_velmeshev_ASD/genes1500_genes_Velmeshev_5278_5cluster_catalysis-precedes.rData

scripts/demonstrate the results/edge found/catalysis precedes all ebic edges/5278_velmeshev_ASD/pois_opt_graphs_5278_catalysis-precedes_glasso0.7_2639edges.rData

scripts/demonstrate the results/edge found/catalysis precedes all ebic edges/5531_velmeshev_ASD/dep_hurd_opt_graphs_5531_catalysis-precedes_glasso0.7_1463edges.rData

scripts/demonstrate the results/edge found/catalysis precedes all ebic edges/5531_velmeshev_ASD/dep_pois_opt_graphs_5531_catalysis-precedes_glasso0.7_1223edges.rData

scripts/demonstrate the results/edge found/catalysis precedes all ebic edges/5531_velmeshev_ASD/genes1500_genes_Velmeshev_5531_5cluster_catalysis-precedes.rData

scripts/demonstrate the results/edge found/catalysis precedes all ebic edges/5531_velmeshev_ASD/pois_opt_graphs_5531_catalysis-precedes_glasso0.7_5377edges.rData

scripts/demonstrate the results/edge found/catalysis precedes all ebic edges/5958_velmeshev_control/dep_hurd_opt_graphs_5958_catalysis-precedes_glasso0.7_995edges.rData

scripts/demonstrate the results/edge found/catalysis precedes all ebic edges/5958_velmeshev_control/dep_pois_opt_graphs_5958_catalysis-precedes_glasso0.7_792edges.rData

scripts/demonstrate the results/edge found/catalysis precedes all ebic edges/5958_velmeshev_control/genes1500_genes_Velmeshev_5958_5cluster_catalysis-precedes.rData

scripts/demonstrate the results/edge found/catalysis precedes all ebic edges/5958_velmeshev_control/pois_opt_graphs_5958_catalysis-precedes_glasso0.7_4444edges.rData

scripts/demonstrate the results/edge found/catalysis precedes all ebic edges/gierahn/dep_hurd_opt_graphs_gierahn_catalysis-precedes_glasso0.7_118edges.rData

scripts/demonstrate the results/edge found/catalysis precedes all ebic edges/gierahn/dep_pois_opt_graphs_gierahn_catalysis-precedes_glasso0.7_118edges.rData

scripts/demonstrate the results/edge found/catalysis precedes all ebic edges/gierahn/genes1500_gierahn_catalysis-precedes.rData

scripts/demonstrate the results/edge found/catalysis precedes all ebic edges/gierahn/pois_opt_graphs_gierahn_catalysis-precedes_glasso0.7_1370edges.rData

scripts/demonstrate the results/edge found/catalysis precedes top 500 edges/4341_velmeshev_control/dep_hurd_opt_graphs_4341_catalysis-precedes_glasso0.7_500edges.rData

scripts/demonstrate the results/edge found/catalysis precedes top 500 edges/4341_velmeshev_control/dep_pois_opt_graphs_4341_catalysis-precedes_glasso0.7_500edges.rData

scripts/demonstrate the results/edge found/catalysis precedes top 500 edges/4341_velmeshev_control/genes1500_genes_Velmeshev_4341_5cluster_catalysis-precedes.rData

scripts/demonstrate the results/edge found/catalysis precedes top 500 edges/4341_velmeshev_control/pois_opt_graphs_4341_catalysis-precedes_glasso0.7_500edges.rData

scripts/demonstrate the results/edge found/catalysis precedes top 500 edges/5278_velmeshev_ASD/dep_hurd_opt_graphs_5278_catalysis-precedes_glasso0.7_500edges.rData

scripts/demonstrate the results/edge found/catalysis precedes top 500 edges/5278_velmeshev_ASD/dep_pois_opt_graphs_5278_catalysis-precedes_glasso0.7_500edges.rData

scripts/demonstrate the results/edge found/catalysis precedes top 500 edges/5278_velmeshev_ASD/genes1500_genes_Velmeshev_5278_5cluster_catalysis-precedes.rData

scripts/demonstrate the results/edge found/catalysis precedes top 500 edges/5278_velmeshev_ASD/pois_opt_graphs_5278_catalysis-precedes_glasso0.7_500edges.rData

scripts/demonstrate the results/edge found/catalysis precedes top 500 edges/5531_velmeshev_ASD/dep_hurd_opt_graphs_5531_catalysis-precedes_glasso0.7_500edges.rData

scripts/demonstrate the results/edge found/catalysis precedes top 500 edges/5531_velmeshev_ASD/dep_pois_opt_graphs_5531_catalysis-precedes_glasso0.7_500edges.rData

scripts/demonstrate the results/edge found/catalysis precedes top 500 edges/5531_velmeshev_ASD/genes1500_genes_Velmeshev_5531_5cluster_catalysis-precedes.rData

scripts/demonstrate the results/edge found/catalysis precedes top 500 edges/5531_velmeshev_ASD/pois_opt_graphs_5531_catalysis-precedes_glasso0.7_500edges.rData

scripts/demonstrate the results/edge found/catalysis precedes top 500 edges/5958_velmeshev_control/dep_hurd_opt_graphs_5958_catalysis-precedes_glasso0.7_500edges.rData

scripts/demonstrate the results/edge found/catalysis precedes top 500 edges/5958_velmeshev_control/dep_pois_opt_graphs_5958_catalysis-precedes_glasso0.7_500edges.rData

scripts/demonstrate the results/edge found/catalysis precedes top 500 edges/5958_velmeshev_control/genes1500_genes_Velmeshev_5958_5cluster_catalysis-precedes.rData

scripts/demonstrate the results/edge found/catalysis precedes top 500 edges/5958_velmeshev_control/pois_opt_graphs_5958_catalysis-precedes_glasso0.7_500edges.rData

scripts/demonstrate the results/edge found/catalysis precedes top 500 edges/gierahn/dep_hurd_opt_graphs_gierahn_catalysis-precedes_glasso0.7_100edges.rData

scripts/demonstrate the results/edge found/catalysis precedes top 500 edges/gierahn/dep_pois_opt_graphs_gierahn_catalysis-precedes_glasso0.7_100edges.rData

scripts/demonstrate the results/edge found/catalysis precedes top 500 edges/gierahn/genes1500_gierahn_catalysis-precedes.rData

scripts/demonstrate the results/edge found/catalysis precedes top 500 edges/gierahn/pois_opt_graphs_gierahn_catalysis-precedes_glasso0.7_100edges.rData

scripts/demonstrate the results/edge found/controls expression all ebic edges/4341_velmeshev_control/dep_hurd_opt_graphs_4341_controls-expression-of_glasso0.7_678edges.rData

scripts/demonstrate the results/edge found/controls expression all ebic edges/4341_velmeshev_control/dep_pois_opt_graphs_4341_controls-expression-of_glasso0.7_583edges.rData

scripts/demonstrate the results/edge found/controls expression all ebic edges/4341_velmeshev_control/pois_opt_graphs_4341_controls-expression-of_glasso0.7_2823edges.rData

scripts/demonstrate the results/edge found/controls expression all ebic edges/5278_velmeshev_ASD/dep_hurd_opt_graphs_5278_controls-expression-of_glasso0.7_676edges.rData

scripts/demonstrate the results/edge found/controls expression all ebic edges/5278_velmeshev_ASD/dep_pois_opt_graphs_5278_controls-expression-of_glasso0.7_601edges.rData

scripts/demonstrate the results/edge found/controls expression all ebic edges/5278_velmeshev_ASD/pois_opt_graphs_5278_controls-expression-of_glasso0.7_2535edges.rData

scripts/demonstrate the results/edge found/controls expression all ebic edges/5531_velmeshev_ASD/dep_hurd_opt_graphs_5531_controls-expression-of_glasso0.7_882edges.rData

scripts/demonstrate the results/edge found/controls expression all ebic edges/5531_velmeshev_ASD/dep_pois_opt_graphs_5531_controls-expression-of_glasso0.7_734edges.rData

scripts/demonstrate the results/edge found/controls expression all ebic edges/5531_velmeshev_ASD/pois_opt_graphs_5531_controls-expression-of_glasso0.7_3572edges.rData

scripts/demonstrate the results/edge found/controls expression all ebic edges/5958_velmeshev_control/dep_hurd_opt_graphs_5958_controls-expression-of_glasso0.7_651edges.rData

scripts/demonstrate the results/edge found/controls expression all ebic edges/5958_velmeshev_control/dep_pois_opt_graphs_5958_controls-expression-of_glasso0.7_566edges.rData

scripts/demonstrate the results/edge found/controls expression all ebic edges/5958_velmeshev_control/pois_opt_graphs_5958_controls-expression-of_glasso0.7_3402edges.rData

scripts/demonstrate the results/edge found/controls expression all ebic edges/genes1500_genes_Velmeshev_4341_5cluster_controls-expression-of.rData

scripts/demonstrate the results/edge found/controls expression all ebic edges/genes1500_genes_Velmeshev_5278_5cluster_controls-expression-of.rData

scripts/demonstrate the results/edge found/controls expression all ebic edges/genes1500_genes_Velmeshev_5531_5cluster_controls-expression-of.rData

scripts/demonstrate the results/edge found/controls expression all ebic edges/genes1500_genes_Velmeshev_5958_5cluster_controls-expression-of.rData

scripts/demonstrate the results/edge found/controls expression all ebic edges/genes1500_gierahn_controls-expression-of.rData

scripts/demonstrate the results/edge found/controls expression of top 500 edges/4341_velmeshev_control/dep_hurd_opt_graphs_4341_controls-expression-of_glasso0.7_500edges.rData

scripts/demonstrate the results/edge found/controls expression of top 500 edges/4341_velmeshev_control/dep_pois_opt_graphs_4341_controls-expression-of_glasso0.7_500edges.rData

scripts/demonstrate the results/edge found/controls expression of top 500 edges/4341_velmeshev_control/pois_opt_graphs_4341_controls-expression-of_glasso0.7_500edges.rData

scripts/demonstrate the results/edge found/controls expression of top 500 edges/5278_velmeshev_ASD/dep_hurd_opt_graphs_5278_controls-expression-of_glasso0.7_500edges.rData

scripts/demonstrate the results/edge found/controls expression of top 500 edges/5278_velmeshev_ASD/dep_pois_opt_graphs_5278_controls-expression-of_glasso0.7_500edges.rData

scripts/demonstrate the results/edge found/controls expression of top 500 edges/5278_velmeshev_ASD/pois_opt_graphs_5278_controls-expression-of_glasso0.7_500edges.rData

scripts/demonstrate the results/edge found/controls expression of top 500 edges/5531_velmeshev_ASD/dep_hurd_opt_graphs_5531_controls-expression-of_glasso0.7_500edges.rData

scripts/demonstrate the results/edge found/controls expression of top 500 edges/5531_velmeshev_ASD/dep_pois_opt_graphs_5531_controls-expression-of_glasso0.7_500edges.rData

scripts/demonstrate the results/edge found/controls expression of top 500 edges/5531_velmeshev_ASD/pois_opt_graphs_5531_controls-expression-of_glasso0.7_500edges.rData

scripts/demonstrate the results/edge found/controls expression of top 500 edges/5958_velmeshev_control/dep_hurd_opt_graphs_5958_controls-expression-of_glasso0.7_500edges.rData

scripts/demonstrate the results/edge found/controls expression of top 500 edges/5958_velmeshev_control/dep_pois_opt_graphs_5958_controls-expression-of_glasso0.7_500edges.rData

scripts/demonstrate the results/edge found/controls expression of top 500 edges/5958_velmeshev_control/pois_opt_graphs_5958_controls-expression-of_glasso0.7_500edges.rData

scripts/demonstrate the results/figures/.DS_Store

scripts/demonstrate the results/figures_pub/.DS_Store

scripts/demonstrate the results/figures_pub/dhurd_4341_catalysis-precedes_SFAR.graffle/data.plist

scripts/demonstrate the results/figures_pub/dhurd_4341_catalysis-precedes_SFAR.graffle/image5.pdf scripts/demonstrate the results/figures_pub/dhurd_4341_catalysis-precedes_SFAR.graffle/image6.pdf scripts/demonstrate the results/figures_pub/dhurd_4341_catalysis-precedes_SFAR.graffle/image7.pdf scripts/demonstrate the results/figures_pub/dhurd_4341_catalysis-precedes_SFAR.pdf

scripts/demonstrate the results/figures_pub/dhurd_5278_catalysis-precedes_SFAR.graffle/data.plist

scripts/demonstrate the results/figures_pub/dhurd_5278_catalysis-precedes_SFAR.graffle/image21.pdf scripts/demonstrate the results/figures_pub/dhurd_5278_catalysis-precedes_SFAR.graffle/image22.pdf scripts/demonstrate the results/figures_pub/dhurd_5278_catalysis-precedes_SFAR.graffle/image23.pdf scripts/demonstrate the results/figures_pub/dhurd_5278_catalysis-precedes_SFAR.graffle/image24.pdf scripts/demonstrate the results/figures_pub/dhurd_5278_catalysis-precedes_SFAR.graffle/image25.pdf scripts/demonstrate the results/figures_pub/dhurd_5278_catalysis-precedes_SFAR.pdf

scripts/demonstrate the results/figures_pub/dhurd_5531_catalysis-precedes_SFAR.graffle/data.plist

scripts/demonstrate the results/figures_pub/dhurd_5531_catalysis-precedes_SFAR.graffle/image12.pdf scripts/demonstrate the results/figures_pub/dhurd_5531_catalysis-precedes_SFAR.graffle/image14.pdf scripts/demonstrate the results/figures_pub/dhurd_5531_catalysis-precedes_SFAR.graffle/image15.pdf scripts/demonstrate the results/figures_pub/dhurd_5531_catalysis-precedes_SFAR.graffle/image16.pdf scripts/demonstrate the results/figures_pub/dhurd_5531_catalysis-precedes_SFAR.graffle/image8.pdf scripts/demonstrate the results/figures_pub/dhurd_5531_catalysis-precedes_SFAR.graffle/image9.pdf scripts/demonstrate the results/figures_pub/dhurd_5531_catalysis-precedes_SFAR.pdf

scripts/demonstrate the results/figures_pub/dhurd_5958_catalysis-precedes_SFAR.graffle/data.plist

scripts/demonstrate the results/figures_pub/dhurd_5958_catalysis-precedes_SFAR.graffle/image4.pdf scripts/demonstrate the results/figures_pub/dhurd_5958_catalysis-precedes_SFAR.graffle/image5.pdf scripts/demonstrate the results/figures_pub/dhurd_5958_catalysis-precedes_SFAR.graffle/image6.pdf scripts/demonstrate the results/figures_pub/dhurd_5958_catalysis-precedes_SFAR.pdf

scripts/demonstrate the results/output/dhurd_4341_catalysis-precedes_SFAR.tsv

scripts/demonstrate the results/output/dhurd_5278_catalysis-precedes_SFAR.tsv

scripts/demonstrate the results/output/dhurd_5531_catalysis-precedes_SFAR.tsv

scripts/demonstrate the results/output/dhurd_5958_catalysis-precedes_SFAR.tsv

scripts/demonstrate the results/step1_check_data.R

scripts/demonstrate the results/step1_check_data.sh

scripts/demonstrate the results/step1_check_data_4341_control.Rout

scripts/demonstrate the results/step1_check_data_5278_ASD.Rout

scripts/demonstrate the results/step1_check_data_5531_ASD.Rout

scripts/demonstrate the results/step1_check_data_5958_control.Rout

scripts/model estimation and explanation/Data/Gierahn2017_raw.rData

scripts/model estimation and explanation/Data/genes_Velmeshev_4341_5cluster.rData

scripts/model estimation and explanation/Data/genes_Velmeshev_5278_5cluster.rData

scripts/model estimation and explanation/Data/genes_Velmeshev_5531_5cluster.rData

scripts/model estimation and explanation/Data/genes_Velmeshev_5958_5cluster.rData

scripts/model estimation and explanation/analyze data.R scripts/model estimation and explanation/scRNA-seq_estimation.r scripts/model estimation and explanation/scRNA-seq_find_edge.R scripts/readme.md scripts/simulation result/compare_time.R scripts/simulation result/compare_with_gold_standard.R

hwang655/HUG documentation built on Jan. 31, 2021, 2:54 a.m.

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hwang655/HUG
Dependent Graphical Model Estimation

Files in hwang655/HUG
Dependent Graphical Model Estimation

R Package Documentation

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hwang655/HUG Dependent Graphical Model Estimation

Files in hwang655/HUG Dependent Graphical Model Estimation

R Package Documentation

Browse R Packages

We want your feedback!

hwang655/HUG
Dependent Graphical Model Estimation

Files in hwang655/HUG
Dependent Graphical Model Estimation