Files in hxia/Achilles4Impala
Creates descriptive statistics summary for an entire OMOP CDM instance.
.Rbuildignore
.gitignore
.project
Achilles4Impala.Rproj
DESCRIPTION
NAMESPACE
R/Achilles-internal.R
R/Achilles-package.R
R/Achilles.R
R/AchillesViewResults.R
R/TestAchillesCode.R
R/TestAchillesViewResultsCode.R
R/TestExportCode.R
R/exportToJson.R
R/exportToJson4Impala.R
README.md
data/allReports.rda
inst/csv/analysisDetails.csv
inst/java/RedshiftJDBC4-1.1.10.1010.jar
inst/java/impala-jdbc-0.5-2/commons-logging-1.0.4.jar
inst/java/impala-jdbc-0.5-2/hive-jdbc-0.10.0-cdh4.2.0.jar
inst/java/impala-jdbc-0.5-2/hive-metastore-0.10.0-cdh4.2.0.jar
inst/java/impala-jdbc-0.5-2/hive-service-0.10.0-cdh4.2.0.jar
inst/java/impala-jdbc-0.5-2/libfb303-0.9.0.jar
inst/java/impala-jdbc-0.5-2/libthrift-0.9.0.jar
inst/java/impala-jdbc-0.5-2/log4j-1.2.16.jar
inst/java/impala-jdbc-0.5-2/slf4j-api-1.6.4.jar
inst/java/impala-jdbc-0.5-2/slf4j-log4j12-1.6.1.jar
inst/java/jtds-1.2.7.jar
inst/java/mysql-connector-java-5.1.30-bin.jar
inst/java/ojdbc6.jar
inst/java/postgresql-9.3-1101.jdbc4.jar
inst/java/sqljdbc4.jar
inst/sql/Impala/AchillesHeel_v5.sql
inst/sql/Impala/Achilles_v5.sql
inst/sql/Impala/Achilles_v5/AchillesHeel_v5_Impala.sql
inst/sql/Impala/Achilles_v5/care_site.sql
inst/sql/Impala/Achilles_v5/cohort.sql
inst/sql/Impala/Achilles_v5/condition_era.sql
inst/sql/Impala/Achilles_v5/condition_occurrence.sql
inst/sql/Impala/Achilles_v5/death.sql
inst/sql/Impala/Achilles_v5/drug_cost.sql
inst/sql/Impala/Achilles_v5/drug_era.sql
inst/sql/Impala/Achilles_v5/drug_exposure.sql
inst/sql/Impala/Achilles_v5/location.sql
inst/sql/Impala/Achilles_v5/measurement.sql
inst/sql/Impala/Achilles_v5/observation.sql
inst/sql/Impala/Achilles_v5/observation_period.sql
inst/sql/Impala/Achilles_v5/payer_plan_period.sql
inst/sql/Impala/Achilles_v5/person.sql
inst/sql/Impala/Achilles_v5/procedure_cost.sql
inst/sql/Impala/Achilles_v5/procedure_occurrence.sql
inst/sql/Impala/Achilles_v5/provider.sql
inst/sql/Impala/Achilles_v5/run.sh
inst/sql/Impala/Achilles_v5/start.sql
inst/sql/Impala/Achilles_v5/visit_occurrence.sql
inst/sql/Impala/Achilles_v5_translate.sql
inst/sql/Impala/export_v5/achillesheel/sqlAchillesHeel.sql
inst/sql/Impala/export_v5/condition/sqlAgeAtFirstDiagnosis.sql
inst/sql/Impala/export_v5/condition/sqlConditionTreemap.sql
inst/sql/Impala/export_v5/condition/sqlConditionsByType.sql
inst/sql/Impala/export_v5/condition/sqlPrevalenceByGenderAgeYear.sql
inst/sql/Impala/export_v5/condition/sqlPrevalenceByMonth.sql
inst/sql/Impala/export_v5/conditionera/sqlAgeAtFirstDiagnosis.sql
inst/sql/Impala/export_v5/conditionera/sqlConditionEraTreemap.sql
inst/sql/Impala/export_v5/conditionera/sqlLengthOfEra.sql
inst/sql/Impala/export_v5/conditionera/sqlPrevalenceByGenderAgeYear.sql
inst/sql/Impala/export_v5/conditionera/sqlPrevalenceByMonth.sql
inst/sql/Impala/export_v5/datadensity/conceptsperperson.sql
inst/sql/Impala/export_v5/datadensity/recordsperperson.sql
inst/sql/Impala/export_v5/datadensity/totalrecords.sql
inst/sql/Impala/export_v5/death/sqlAgeAtDeath.sql
inst/sql/Impala/export_v5/death/sqlDeathByType.sql
inst/sql/Impala/export_v5/death/sqlPrevalenceByGenderAgeYear.sql
inst/sql/Impala/export_v5/death/sqlPrevalenceByMonth.sql
inst/sql/Impala/export_v5/drug/sqlAgeAtFirstExposure.sql
inst/sql/Impala/export_v5/drug/sqlDaysSupplyDistribution.sql
inst/sql/Impala/export_v5/drug/sqlDrugTreemap.sql
inst/sql/Impala/export_v5/drug/sqlDrugsByType.sql
inst/sql/Impala/export_v5/drug/sqlPrevalenceByGenderAgeYear.sql
inst/sql/Impala/export_v5/drug/sqlPrevalenceByMonth.sql
inst/sql/Impala/export_v5/drug/sqlQuantityDistribution.sql
inst/sql/Impala/export_v5/drug/sqlRefillsDistribution.sql
inst/sql/Impala/export_v5/drugera/sqlAgeAtFirstExposure.sql
inst/sql/Impala/export_v5/drugera/sqlDrugEraTreemap.sql
inst/sql/Impala/export_v5/drugera/sqlLengthOfEra.sql
inst/sql/Impala/export_v5/drugera/sqlPrevalenceByGenderAgeYear.sql
inst/sql/Impala/export_v5/drugera/sqlPrevalenceByMonth.sql
inst/sql/Impala/export_v5/measurement/sqlAgeAtFirstOccurrence.sql
inst/sql/Impala/export_v5/measurement/sqlLowerLimitDistribution.sql
inst/sql/Impala/export_v5/measurement/sqlMeasurementTreemap.sql
inst/sql/Impala/export_v5/measurement/sqlMeasurementValueDistribution.sql
inst/sql/Impala/export_v5/measurement/sqlMeasurementsByType.sql
inst/sql/Impala/export_v5/measurement/sqlPrevalenceByGenderAgeYear.sql
inst/sql/Impala/export_v5/measurement/sqlPrevalenceByMonth.sql
inst/sql/Impala/export_v5/measurement/sqlRecordsByUnit.sql
inst/sql/Impala/export_v5/measurement/sqlUpperLimitDistribution.sql
inst/sql/Impala/export_v5/measurement/sqlValuesRelativeToNorm.sql
inst/sql/Impala/export_v5/observation/sqlAgeAtFirstOccurrence.sql
inst/sql/Impala/export_v5/observation/sqlObservationTreemap.sql
inst/sql/Impala/export_v5/observation/sqlObservationsByType.sql
inst/sql/Impala/export_v5/observation/sqlPrevalenceByGenderAgeYear.sql
inst/sql/Impala/export_v5/observation/sqlPrevalenceByMonth.sql
inst/sql/Impala/export_v5/observationperiod/ageatfirst.sql
inst/sql/Impala/export_v5/observationperiod/agebygender.sql
inst/sql/Impala/export_v5/observationperiod/cumulativeduration.sql
inst/sql/Impala/export_v5/observationperiod/observationlength_data.sql
inst/sql/Impala/export_v5/observationperiod/observationlength_stats.sql
inst/sql/Impala/export_v5/observationperiod/observationlengthbyage.sql
inst/sql/Impala/export_v5/observationperiod/observationlengthbygender.sql
inst/sql/Impala/export_v5/observationperiod/observedbymonth.sql
inst/sql/Impala/export_v5/observationperiod/observedbyyear_data.sql
inst/sql/Impala/export_v5/observationperiod/observedbyyear_stats.sql
inst/sql/Impala/export_v5/observationperiod/periodsperperson.sql
inst/sql/Impala/export_v5/person/ethnicity.sql
inst/sql/Impala/export_v5/person/gender.sql
inst/sql/Impala/export_v5/person/population.sql
inst/sql/Impala/export_v5/person/race.sql
inst/sql/Impala/export_v5/person/yearofbirth_data.sql
inst/sql/Impala/export_v5/person/yearofbirth_stats.sql
inst/sql/Impala/export_v5/procedure/sqlAgeAtFirstOccurrence.sql
inst/sql/Impala/export_v5/procedure/sqlPrevalenceByGenderAgeYear.sql
inst/sql/Impala/export_v5/procedure/sqlPrevalenceByMonth.sql
inst/sql/Impala/export_v5/procedure/sqlProcedureTreemap.sql
inst/sql/Impala/export_v5/procedure/sqlProceduresByType.sql
inst/sql/Impala/export_v5/visit/sqlAgeAtFirstOccurrence.sql
inst/sql/Impala/export_v5/visit/sqlPrevalenceByGenderAgeYear.sql
inst/sql/Impala/export_v5/visit/sqlPrevalenceByMonth.sql
inst/sql/Impala/export_v5/visit/sqlVisitDurationByType.sql
inst/sql/Impala/export_v5/visit/sqlVisitTreemap.sql
inst/sql/sql_server/AchillesHeel_v4.sql
inst/sql/sql_server/AchillesHeel_v5.sql
inst/sql/sql_server/Achilles_v4.sql
inst/sql/sql_server/Achilles_v5.sql
inst/sql/sql_server/Achilles_v5_translate.sql
inst/sql/sql_server/export_v4/achillesheel/sqlAchillesHeel.sql
inst/sql/sql_server/export_v4/condition/sqlAgeAtFirstDiagnosis.sql
inst/sql/sql_server/export_v4/condition/sqlConditionTreemap.sql
inst/sql/sql_server/export_v4/condition/sqlConditionsByType.sql
inst/sql/sql_server/export_v4/condition/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v4/condition/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v4/conditionera/sqlAgeAtFirstDiagnosis.sql
inst/sql/sql_server/export_v4/conditionera/sqlConditionEraTreemap.sql
inst/sql/sql_server/export_v4/conditionera/sqlLengthOfEra.sql
inst/sql/sql_server/export_v4/conditionera/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v4/conditionera/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v4/datadensity/conceptsperperson.sql
inst/sql/sql_server/export_v4/datadensity/recordsperperson.sql
inst/sql/sql_server/export_v4/datadensity/totalrecords.sql
inst/sql/sql_server/export_v4/death/sqlAgeAtDeath.sql
inst/sql/sql_server/export_v4/death/sqlDeathByType.sql
inst/sql/sql_server/export_v4/death/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v4/death/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v4/drug/sqlAgeAtFirstExposure.sql
inst/sql/sql_server/export_v4/drug/sqlDaysSupplyDistribution.sql
inst/sql/sql_server/export_v4/drug/sqlDrugTreemap.sql
inst/sql/sql_server/export_v4/drug/sqlDrugsByType.sql
inst/sql/sql_server/export_v4/drug/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v4/drug/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v4/drug/sqlQuantityDistribution.sql
inst/sql/sql_server/export_v4/drug/sqlRefillsDistribution.sql
inst/sql/sql_server/export_v4/drugera/sqlAgeAtFirstExposure.sql
inst/sql/sql_server/export_v4/drugera/sqlDrugEraTreemap.sql
inst/sql/sql_server/export_v4/drugera/sqlLengthOfEra.sql
inst/sql/sql_server/export_v4/drugera/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v4/drugera/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v4/observation/sqlAgeAtFirstOccurrence.sql
inst/sql/sql_server/export_v4/observation/sqlLowerLimitDistribution.sql
inst/sql/sql_server/export_v4/observation/sqlObservationTreemap.sql
inst/sql/sql_server/export_v4/observation/sqlObservationValueDistribution.sql
inst/sql/sql_server/export_v4/observation/sqlObservationsByType.sql
inst/sql/sql_server/export_v4/observation/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v4/observation/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v4/observation/sqlRecordsByUnit.sql
inst/sql/sql_server/export_v4/observation/sqlUpperLimitDistribution.sql
inst/sql/sql_server/export_v4/observation/sqlValuesRelativeToNorm.sql
inst/sql/sql_server/export_v4/observationperiod/ageatfirst.sql
inst/sql/sql_server/export_v4/observationperiod/agebygender.sql
inst/sql/sql_server/export_v4/observationperiod/cumulativeduration.sql
inst/sql/sql_server/export_v4/observationperiod/observationlength_data.sql
inst/sql/sql_server/export_v4/observationperiod/observationlength_stats.sql
inst/sql/sql_server/export_v4/observationperiod/observationlengthbyage.sql
inst/sql/sql_server/export_v4/observationperiod/observationlengthbygender.sql
inst/sql/sql_server/export_v4/observationperiod/observedbymonth.sql
inst/sql/sql_server/export_v4/observationperiod/observedbyyear_data.sql
inst/sql/sql_server/export_v4/observationperiod/observedbyyear_stats.sql
inst/sql/sql_server/export_v4/observationperiod/periodsperperson.sql
inst/sql/sql_server/export_v4/person/ethnicity.sql
inst/sql/sql_server/export_v4/person/gender.sql
inst/sql/sql_server/export_v4/person/population.sql
inst/sql/sql_server/export_v4/person/race.sql
inst/sql/sql_server/export_v4/person/yearofbirth_data.sql
inst/sql/sql_server/export_v4/person/yearofbirth_stats.sql
inst/sql/sql_server/export_v4/procedure/sqlAgeAtFirstOccurrence.sql
inst/sql/sql_server/export_v4/procedure/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v4/procedure/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v4/procedure/sqlProcedureTreemap.sql
inst/sql/sql_server/export_v4/procedure/sqlProceduresByType.sql
inst/sql/sql_server/export_v4/visit/sqlAgeAtFirstOccurrence.sql
inst/sql/sql_server/export_v4/visit/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v4/visit/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v4/visit/sqlVisitDurationByType.sql
inst/sql/sql_server/export_v4/visit/sqlVisitTreemap.sql
inst/sql/sql_server/export_v5/achillesheel/sqlAchillesHeel.sql
inst/sql/sql_server/export_v5/condition/sqlAgeAtFirstDiagnosis.sql
inst/sql/sql_server/export_v5/condition/sqlConditionTreemap.sql
inst/sql/sql_server/export_v5/condition/sqlConditionsByType.sql
inst/sql/sql_server/export_v5/condition/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v5/condition/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v5/conditionera/sqlAgeAtFirstDiagnosis.sql
inst/sql/sql_server/export_v5/conditionera/sqlConditionEraTreemap.sql
inst/sql/sql_server/export_v5/conditionera/sqlLengthOfEra.sql
inst/sql/sql_server/export_v5/conditionera/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v5/conditionera/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v5/datadensity/conceptsperperson.sql
inst/sql/sql_server/export_v5/datadensity/recordsperperson.sql
inst/sql/sql_server/export_v5/datadensity/totalrecords.sql
inst/sql/sql_server/export_v5/death/sqlAgeAtDeath.sql
inst/sql/sql_server/export_v5/death/sqlDeathByType.sql
inst/sql/sql_server/export_v5/death/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v5/death/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v5/drug/sqlAgeAtFirstExposure.sql
inst/sql/sql_server/export_v5/drug/sqlDaysSupplyDistribution.sql
inst/sql/sql_server/export_v5/drug/sqlDrugTreemap.sql
inst/sql/sql_server/export_v5/drug/sqlDrugsByType.sql
inst/sql/sql_server/export_v5/drug/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v5/drug/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v5/drug/sqlQuantityDistribution.sql
inst/sql/sql_server/export_v5/drug/sqlRefillsDistribution.sql
inst/sql/sql_server/export_v5/drugera/sqlAgeAtFirstExposure.sql
inst/sql/sql_server/export_v5/drugera/sqlDrugEraTreemap.sql
inst/sql/sql_server/export_v5/drugera/sqlLengthOfEra.sql
inst/sql/sql_server/export_v5/drugera/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v5/drugera/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v5/measurement/sqlAgeAtFirstOccurrence.sql
inst/sql/sql_server/export_v5/measurement/sqlLowerLimitDistribution.sql
inst/sql/sql_server/export_v5/measurement/sqlMeasurementTreemap.sql
inst/sql/sql_server/export_v5/measurement/sqlMeasurementValueDistribution.sql
inst/sql/sql_server/export_v5/measurement/sqlMeasurementsByType.sql
inst/sql/sql_server/export_v5/measurement/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v5/measurement/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v5/measurement/sqlRecordsByUnit.sql
inst/sql/sql_server/export_v5/measurement/sqlUpperLimitDistribution.sql
inst/sql/sql_server/export_v5/measurement/sqlValuesRelativeToNorm.sql
inst/sql/sql_server/export_v5/observation/sqlAgeAtFirstOccurrence.sql
inst/sql/sql_server/export_v5/observation/sqlObservationTreemap.sql
inst/sql/sql_server/export_v5/observation/sqlObservationsByType.sql
inst/sql/sql_server/export_v5/observation/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v5/observation/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v5/observationperiod/ageatfirst.sql
inst/sql/sql_server/export_v5/observationperiod/agebygender.sql
inst/sql/sql_server/export_v5/observationperiod/cumulativeduration.sql
inst/sql/sql_server/export_v5/observationperiod/observationlength_data.sql
inst/sql/sql_server/export_v5/observationperiod/observationlength_stats.sql
inst/sql/sql_server/export_v5/observationperiod/observationlengthbyage.sql
inst/sql/sql_server/export_v5/observationperiod/observationlengthbygender.sql
inst/sql/sql_server/export_v5/observationperiod/observedbymonth.sql
inst/sql/sql_server/export_v5/observationperiod/observedbyyear_data.sql
inst/sql/sql_server/export_v5/observationperiod/observedbyyear_stats.sql
inst/sql/sql_server/export_v5/observationperiod/periodsperperson.sql
inst/sql/sql_server/export_v5/person/ethnicity.sql
inst/sql/sql_server/export_v5/person/gender.sql
inst/sql/sql_server/export_v5/person/population.sql
inst/sql/sql_server/export_v5/person/race.sql
inst/sql/sql_server/export_v5/person/yearofbirth_data.sql
inst/sql/sql_server/export_v5/person/yearofbirth_stats.sql
inst/sql/sql_server/export_v5/procedure/sqlAgeAtFirstOccurrence.sql
inst/sql/sql_server/export_v5/procedure/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v5/procedure/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v5/procedure/sqlProcedureTreemap.sql
inst/sql/sql_server/export_v5/procedure/sqlProceduresByType.sql
inst/sql/sql_server/export_v5/visit/sqlAgeAtFirstOccurrence.sql
inst/sql/sql_server/export_v5/visit/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v5/visit/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v5/visit/sqlVisitDurationByType.sql
inst/sql/sql_server/export_v5/visit/sqlVisitTreemap.sql
man/achilles.Rd
man/analysesDetails.Rd
man/exportConditionEraToJson.Rd
man/exportConditionToJson.Rd
man/exportDashboardToJson.Rd
man/exportDataDensityToJson.Rd
man/exportDeathToJson.Rd
man/exportDrugEraToJson.Rd
man/exportDrugToJson.Rd
man/exportHeelToJson.Rd
man/exportMeasurementToJson.Rd
man/exportObservationPeriodToJson.Rd
man/exportObservationToJson.Rd
man/exportPersonToJson.Rd
man/exportProcedureToJson.Rd
man/exportToJson.Rd
man/exportVisitToJson.Rd
man/fetchAchillesAnalysisResults.Rd
man/fetchAchillesHeelResults.Rd
man/getAnalysisDetails.Rd
man/showReportTypes.Rd
tests/testthat.R
tests/testthat/test-main-achilles.R
