Man pages for hyunjimoon/SBC
Simulation Based Calibration for rstan/cmdstanr models
| bind_datasets | Combine multiple datasets together. |
| bind_derived_quantities | Combine two lists of derived quantities |
| bind_generated_quantities-deprecated | Combine two lists of derived quantities |
| bind_globals | Combine two sets globals for use in derived quantities or... |
| bind_results | Combine multiple SBC results together. |
| brms_full_ppred | Full forward sampling of a the response of brms fit,... |
| brms_response_sequence | Determine the response sequence of brms model |
| calculate_prior_sd | Calculate prior standard deviation of a dataset |
| calculate_ranks_draws_matrix | Calculate ranks given variable values within a posterior... |
| check_all_SBC_diagnostics | Check diagnostics and issue warnings when those fail. |
| cjs_dist | Cumulative Jensen-Shannon divergence |
| combine_args | Combine two named lists and overwrite elements with the same... |
| combine-functions | Helper functions to be passed to ECDF-plots to combine... |
| compute_dquants | Compute derived quantities based on given data and posterior... |
| compute_gen_quants-deprecated | Compute derived quantities based on given data and posterior... |
| compute_results-deprecated | Compute SBC results |
| compute_SBC | Fit datasets and evaluate diagnostics and SBC metrics. |
| data_for_ecdf_plots | Maybe not export in the end? Useful for debugging |
| default_chunk_size | Determines the default chunk size. |
| default_cores_per_fit | Determines the default cores per single fit. |
| derived_quantities | Create a definition of derived quantities evaluated in R. |
| ECDF-plots | Plot the ECDF-based plots. |
| empirical_coverage | Compute observed coverage of posterior credible intervals. |
| generate_datasets | Generate datasets. |
| generated_quantities-deprecated | Create a definition of derived quantities evaluated in R. |
| get_diagnostic_messages | Get diagnostic messages for 'SBC_results' or other objects. |
| guess_rank_hist_bins | Guess the number of bins for 'plot_rank_hist()'. |
| max_diff | Max difference between binned samples with the same length |
| plot_contraction | Prior/posterior contraction plot. |
| plot_coverage | Plot the observed coverage and its uncertainty. |
| plot_rank_hist | Plot rank histogram of an SBC results. |
| plot_sim_estimated | Plot the simulated "true" values versus posterior estimates |
| rank2unif | Distance between binned draws (rank for SBC) and discrete... |
| rdunif | Discrete uniform distribution allowing for varying lower and... |
| recompute_SBC_statistics | Recompute SBC statistics without refitting models. |
| recompute_statistics-deprecated | Recompute SBC statistics without refitting models. |
| SBC_backend_brms | Build a backend based on the 'brms' package. |
| SBC_backend_brms_from_generator | Build a brms backend, reusing the compiled model from a... |
| SBC_backend_cmdstan_sample | Backend based on sampling via 'cmdstanr'. |
| SBC_backend_cmdstan_variational | Backend based on variational approximation via 'cmdstanr'. |
| SBC_backend_default_thin_ranks | S3 generic to get backend-specific default thinning for rank... |
| SBC_backend_hash_for_cache | Get hash used to identify cached results. |
| SBC_backend_iid_draws | S3 generic to let backends signal that they produced... |
| SBC_backend_mock | A mock backend. |
| SBC_backend_rjags | Create a JAGS backend using 'rjags' |
| SBC_backend_rstan_optimizing | SBC backend using the 'optimizing' method from 'rstan'. |
| SBC_backend_rstan_sample | SBC backend using the 'sampling' method from 'rstan'. |
| SBC_datasets | Create new 'SBC_datasets' object. |
| SBC-deprecated | Deprecated functions in package 'SBC'. |
| SBC_example_backend | Construct a backend to be used in the examples. |
| SBC_example_generator | Construct a generator used in the examples. |
| SBC_example_results | Combine an example backend with an example generator to... |
| SBC_fit | S3 generic using backend to fit a model to data. |
| SBC_fit_to_diagnostics | S3 generic to get backend-specific diagnostics. |
| SBC_fit_to_draws_matrix | S3 generic converting a fitted model to a 'draws_matrix'... |
| SBC_generator_brms | Create a brms generator. |
| SBC_generator_custom | Wrap a function the creates a complete dataset. |
| SBC_generator_function | Generate datasets via a function that creates a single... |
| SBC_print_example_model | Print the Stan code of a model used in the examples. |
| SBC_results | Create an 'SBC_results' object |
| SBC_statistics_from_single_fit | Recompute SBC statistics given a single fit. |
| set2set | Summarize relational property of overall prior and posterior... |
| sub-.SBC_datasets | Subset an 'SBC_datasets' object. |
| sub-.SBC_results | Subset the results. |
| validate_derived_quantities | Validate a definition of derived quantities evaluated in R. |
| wasserstein | wasserstein distance between binned samples |
