plot_doublet_histogram: Plot histogram of doublet scores for observed transcriptomes...
In iaaaka/Rscrublet: A tool for identifying doublets in single-cell RNA-seq data.
Description
Usage
Arguments
Examples
Description
The histogram for simulated doublets is useful for determining the correct doublet
score threshold. To set threshold to a specific value, T, run call_doublets(threshold=thr.value).
Usage
1
plot_doublet_histogram(nnc, breaks = 30)
Arguments
nnc
list, output of call_doublets function
breaks
number of breaks to be used in hist
Examples
1
2
3
#' scrr = scrub_doublets(E_obs = pbmc8k,expected_doublet_rate=0.06,min_counts=2, min_cells=3, min_gene_variability_pctl=85, n_prin_comps=30)
scrr=call_doublets(scrr)
plot_doublet_histogram(scrr)
iaaaka/Rscrublet documentation built on Dec. 20, 2021, 5:57 p.m.
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Description Usage Arguments Examples
Description
The histogram for simulated doublets is useful for determining the correct doublet score threshold. To set threshold to a specific value, T, run call_doublets(threshold=thr.value).
Usage
1 | plot_doublet_histogram(nnc, breaks = 30)
|
Arguments
nnc |
list, output of call_doublets function |
breaks |
number of breaks to be used in hist |
Examples
1 2 3 | #' scrr = scrub_doublets(E_obs = pbmc8k,expected_doublet_rate=0.06,min_counts=2, min_cells=3, min_gene_variability_pctl=85, n_prin_comps=30)
scrr=call_doublets(scrr)
plot_doublet_histogram(scrr)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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