plotBPs: Boxplot by MP for a range of statistics Figure 3

In iagomosqueira/mseviz: Plots and Visualization Tools for Management Strategy Evaluation Results

Boxplot by MP for a range of statistics Figure 3

Description

Boxplot by MP for a range of statistics Figure 3

Usage

plotBPs(
  data,
  statistics = unique(data$statistic),
  size = 3,
  target = missing,
  limit = missing,
  reference = missing,
  yminmax = c(0.1, 0.9),
  lowupp = c(0.25, 0.75),
  show.mean = NULL
)

Examples

data(perf)
# A data.table of performance statistics per run,
head(perf)
# plot selected statistics
plotBPs(perf, statistics=c("SB0", "FMSY", "green"))
# Use FLR's own colourblind-friendly palette
plotBPs(perf, statistics=c("SB0", "FMSY", "green")) +
  scale_fill_flr()
# Add targets and limits by statistics, as named vectors
plotBPs(perf, statistics=c("SB0", "FMSY", "green"),
  target=c(SB0=0.40, FMSY=1, green=0.5), limit=c(SB0=0.10))
# Add references inm gray
plotBPs(perf, statistics=c("SB0", "FMSY", "green"),
  reference=c(SB0=0.50))
# size controls the diameter of the point behind thin boxplots
plotBPs(perf, statistics=c("SB0", "FMSY", "green"), size=3)
# Signal MPs by type (color) and target level (hue)
plotBPs(perf, statistics=c("SB0", "FMSY", "green")) +
scale_fill_manual(values=c("#f70e4a", "#fa537d", "#fc98b1",
 "#1189af", "#30beeb", "#83d8f3"))

iagomosqueira/mseviz documentation built on Jan. 28, 2024, 10:05 a.m.