ss3slot | R Documentation |
A series of auxiliary functions that convert one or more elements, typically
of class data.frame
. in the list returned by r4ss::SS_output
into particular
FLQuant or FLQuants objects.
ss3index(cpue, fleets)
ss3index.res(cpue, fleets)
ss3index.var(cpue, fleets)
ss3index.q(cpue, fleets)
ss3sel.pattern(selex, years, fleets, morphs, factor = "Asel2")
ss3wt(endgrowth, dmns, birthseas)
ss3mat(endgrowth, dmns, birthseas, option = 3)
ss3m(endgrowth, dmns, birthseas)
ss3n(n, dmns, birthseas)
ss3catch(catage, wtatage, dmns, birthseas, idx)
ss3mat30(endgrowth, dmns, spawnseas, option = 3)
ss3m30(endgrowth, dmns, birthseas)
ss3n30(n, dmns)
ss3catch30(catage, wtatage, dmns, birthseas, idx)
cpue |
A data frame obtained from SS_output$cpue. |
fleets |
Named vector of fleets (numeric) codes |
selex |
A data frame obtained from SS_output$ageselex. |
years |
Vector of years for which the index applies |
morphs |
Vector of morphs to use |
endgrowth |
A data frame obtained from SS_output$endgrowth. |
dmns |
dimnames of the output object, usually obatined using |
birthseas |
The birthseasons for this stock as a numeric vector. |
n |
A data frame obtained from SS_output$natage. |
catage |
A data frame obtained from SS_output$catage. |
wtatage |
A data frame obtained from SS_output$endgrowth but subset for |
idx |
The fishing fleets, as in |
ss3index
returns the index
slot of each survey/CPUE fleet.
ss3index.res
returns the index.res
slot of each survey/CPUE fleet.
ss3index.var
returns the index.var
slot of each survey/CPUE fleet.
ss3index.q
returns the index.q
slot of each survey/CPUE fleet.
ss3sel.pattern
returns the sel.pattern
slot of each survey/CPUE fleet.
ss3wt
returns the stock.wt
slot.
ss3mat
returns the mat
slot.
ss3m
returns the m
slot.
ss3m
returns the m
slot.
ss3catch
currently returns the landings.n
slot, equal to catch.n
as discards are not being parsed.
ss3mat30
returns the mat
slot.
ss3m
returns the m
slot.
ss3n30
returns the stock.n
slot.
ss3catch
currently returns the landings.n
slot, equal to catch.n
as discards are not being parsed.
An FLQuant or FLQuants object, depending on the converted data structure
Iago Mosqueira, EC JRC D02
FLQuant
readFLSss3
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