update_github_sites.R

In iain-t-bennett-roche/flexsurvPlus: Provides Functions to Perform Survival Analysis for Economic models

# script to update the documentation and vignettes hosted at https://roche.github.io/
# for each package once a change is made update the following files then run the appropriate section of code
# this will pre-compile all the vignettes and documentation to the website

##############################################
# Updates to add a new package
# when adding a new package is necessary to include links/make updates in the following files as well as in this script:
# all existing _pkgdown.yml files (update the navbar section for other packages)

# 1) make any updates to the package 
# 2) update documentation using devtools
devtools::document()
devtools::document()

# 3) reinstall the updated package 
devtools::install()

# run checks
covr::package_coverage()
devtools::test()
rcmdcheck::rcmdcheck()

# 4) update the file _pkgdown.yml
# 5) rebuild documentation using pkgdown
pkgdown::build_site()

# Note as the vignettes for some packages can take a long time to run it is
# also possible just to update partial sections by just running the 
# below functions without regenerating the vignettes
pkgdown::build_home()
pkgdown::build_reference()
pkgdown::build_articles_index()
pkgdown::build_article("Fitting_models_in_R")
pkgdown::build_article("Bootstrap_models_in_R")
pkgdown::build_article("Model_theory")
pkgdown::build_article("STEM_compatibility")
pkgdown::build_article("Excel_example_ex1")
pkgdown::build_article("Excel_example_ex2")
pkgdown::build_article("Excel_example_ex3")