plot.osar: plot

In ianjonsen/foieGras: Fit Continuous-Time State-Space and Latent Variable Models for Quality Control of Argos Satellite (and Other) Telemetry Data and for Estimating Changes in Animal Movement

plot

Description

plot One-Step-Ahead (prediction) residuals from a aniMotum osar object

Usage

## S3 method for class 'osar'
plot(
  x,
  type = c("ts", "qqnorm", "acf"),
  pages = 1,
  ncol = 1,
  ask = TRUE,
  pal = "Zissou1",
  ...
)

Arguments

x	a aniMotum osar object with class osar
type	type of residual plot to generate: time-series (ts; default), qqnorm (qq), or acf
pages	plots of all individuals on a single page (pages = 1; default) or each individual on a separate page (pages = 0)
ncol	number of columns to use for faceting. Default is ncol = 2 but this may be increased for multi-individual fit objects
ask	logical; if TRUE (default) user is asked for input before each plot is rendered. set to FALSE to return ggplot objects
pal	grDevices::hcl.colors colour palette to use (default = "Zissou1"; see grDevices::hcl.pals() for options)
...	additional arguments to be ignored

Examples

## generate a fG_ssm fit object (call is for speed only)
xs <- fit_ssm(ellie, spdf=FALSE, model = "rw", time.step=24, 
control = ssm_control(se = FALSE, verbose = 0))

res <- osar(xs) 

plot(res, type = "qq")

ianjonsen/foieGras documentation built on Jan. 17, 2025, 11:15 p.m.