In iantaylor-NOAA/Lingcod_2021: Estimate the Status of Lingcod off the US West Coast in 2021

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STAR requests 15-20

• Tighter M
• Fix M at 0.3

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Lingcod STAT

July 15-16, 2021
]

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Request 15

For the north model, provide a run in which the sd on the prior on natural mortality is divided by 2, do this for both the base model and for model with sex-specific selectivity (model 417). Present model comparisons and associated informative tables/figures as in prior requests. Provide the whole suite of r4ss files for panel review.

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15 Compare time series

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15 Compare recruitment

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15 Compare likelihoods

`r table_sens("../figures/STAR_request15/sens_table_n_star.csv", caption = "", format = "html") %>% kableExtra::kable_styling(font_size = 12) ` --- # 16 Request ### For the north model, provide a run in which female M is fixed at 0.3. Present model comparisons and associated informative tables/figures as in prior requests. --- ### 16 Compare time series .pull-left[ ] .pull-right[ ] --- ### 16 Compare recruitment .pull-left[ ] .pull-right[ ] --- ### 16 Compare likelihoods North

`r table_sens("../figures/STAR_request16/sens_table_n_star.csv", caption = "", format = "html") %>% kableExtra::kable_styling(font_size = 12) ` --- # Request 17 ### Provide a retrospective analysis that goes back 5 years for the northern and southern models. Report the Mohn's rho values –(Woods Hole and Alaskan/Hurtado-Ferro). --- # Request 18 ### Provide the r4ss files for the revised base models. --- # Request 19 ### For the southern model, develop the runs that would fill in a decision table based on the high and low quantiles of _M_ as inferred by the likelihood profile. Provide diagnostic outputs as appropriate. --- # Request 20 ### For the northern model, develop model runs that might encompass the different types of both observational and structural uncertainty by 1) excluding fishery dependent age data from a model and, 2) running a model with sex-specific selectivity (as in model 420) to capture the 'process' uncertainty. Include in the comparison plots and tables the model run in which _M_ is fixed at 0.3 for females. --- ### 20 Timeseries .pull-left-30[ ] .pull-right-70[ ] --- ### 20 Likelihoods

`r table_sens("../figures/STAR_request20/sens_table_n_random.csv", caption = "", format = "html", pretty = FALSE) %>% kableExtra::kable_styling(font_size = 12) `

iantaylor-NOAA/Lingcod_2021 documentation built on Oct. 30, 2024, 6:42 p.m.