NEWS.md

In ibartomeus/rcites: R Interface to the Species+ Database

rcites devel

• Uses unicode escapes for "é" in tests.

rcites 1.3.0

• set_token() now keeps prompting a message as long as the token is an empty character string and it also indicates when a token might not be valid.
• Minor code reformatting throughout the code.
• Cassettes are now recorded in JSON (see #66).

rcites 1.2.0

• Default branch is now set to main.
• synonyms are properly formatted (see #65).
• print() methods are tested (see #57).
• curl::curl_escape(x) is used to encode some URL parts (see #63).
• Consistently uses message() for console (see #60).
• Vignettes are not precomputed (see #58).
• Tests now uses vcr (now listed in Suggests, see #56).
• Classes are now tested properly (see #54).
• rcites_res() gains arguments verbose and raw (see #43 and #62).
• Request status now are reported by warn_for_status() rather than by stop_for_status(), this prevents fast-failing in batch mode (see #62).

rcites 1.1.0

• Internal function rcites_simplify_distributions() has been re-written to fix a bug that made spp_distributions() throw an error for taxon_id with only one distribution entry (see #53).
• spp_*() functions gain an argument pause (see #50 and #51 following the issue reported by @fleurhierink in #49).
• Minor text editions through the documentation.
• Return an empty data frame when there is no listing available for a given species (fix #47 reported by @eveskew).

rcites 1.0.1

New features :art:

• rcites now imports cli :package: to:
• clarify notes reported when downloading material;
• color titles in the default print methods.

Bugs fixed :bug:

• Fix a bug that prevented spp_taxonconcept() from downloading all the taxon concepts, see #42.

• Fix a bug that generated infinte recursion error when using non-interactively without token, see #44.

rcites 1.0.0

New features :art:

• spp_taxonconcept() now includes an auto-pagination that allows to retrieve all entries for queries that have more than 500 results;
• spp_taxonconcept(), spp_eu_legislation(), spp_cites_legislation() and spp_references() now supports vectors as taxon_id argument which allows bulk analysis.
• Functions spp_* now returns S3 objects:
  • spp_taxonconcept() returns an object of class spp_taxon;
  • spp_cites_legislation() returns an object of class spp_cites_leg or spp_cites_leg_multi;
  • spp_eu_legislation() returns an object of class spp_eu_leg or spp_eu_leg_multi;
  • spp_distributions() returns an object of class spp_distr or spp_distr_multi;
  • spp_references() returns an object of class spp_refs or spp_refs_multi;
• Moreover:
  • spp_raw class is defined for all functions including the argument raw, it returns the parsed output from the API as a list object.

New function arguments

• taxonomy, with_descendants, language, updated_since, per_page, seq_page, raw, verbose in spp_taxonconcept();
• scope, language and raw to spp_cites_legislation();
• scope, language and raw to spp_eu_legislation();
• language and raw to spp_distributions().

Function renamed

• set_token() instead of sppplus_login();
• spp_taxonconcept() instead of sppplus_taxonconcept();
• spp_cites_legislation() instead of taxon_cites_legislation();
• spp_eu_legislation() instead of taxon_eu_legislation();
• spp_distributions() instead of taxon_distribution();
• spp_references() instead of taxon_references();
• rcites_simplify() instead of sppplus_simplify();
• rcites_ instead of sppplus_ for helper functions.

Using goodpractice

• use '<-' for assignment instead of '=',
• omit "Date" in DESCRIPTION,
• avoid 1:length(...), 1:nrow(...), 1:ncol(...).

rcites 0.1.0

NB: this was the first release :one:

Features :art:

• spp_taxonconcept( ): access the Speciesplus taxon concept
• spp_cites_legislation( ): access CITES legislation data
• spp_eu_legislation( ): access EU legislation data
• spp_distributions( ): access a taxon distribution data
• spp_references( ): access a listing reference data

ibartomeus/rcites documentation built on Feb. 26, 2023, 12:29 a.m.