Files in ibn-salem/chromloop
Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs

.Rbuildignore
.gitignore
.lintr
.travis.yml
DESCRIPTION
NAMESPACE
R/data.R R/interaction.R R/parseChIP-seq.R R/parseInteractions.R R/prediction.R R/sevenC.R README.md
_pkgdown.yml
codecov.yml
data-raw/download-raw-data.R
data-raw/v05_screen_TF_lfc.motifPval2.5e-06_w1000_b1.TFspecific_ModelDF_meta.tsv
data-raw/v05_screen_TF_lfc.motifPval2.5e-06_w1000_b1.bestNModelDF.tsv
data-raw/v05_screen_TF_lfc.motifPval2.5e-06_w1000_b1.f1ModelDF.tsv
data-raw/v05_screen_TF_lfc.motifPval2.5e-06_w1000_b1.topNf1ModelDF.tsv
data/TFspecificModels.rda
data/cutoffBest10.rda
data/cutoffByTF.rda
data/modelBest10Avg.rda
data/motif.hg19.CTCF.chr22.cov.rda
data/motif.hg19.CTCF.chr22.rda
data/motif.hg19.CTCF.rda
inst/CITATION
inst/NEWS
inst/extdata/ChIA-PET_GM12878_Tang2015.chr22_1-30000000.clusters.txt
inst/extdata/GM12878_HiCCUPS.chr22_1-30000000.loop.txt
inst/extdata/GM12878_Stat1.chr22_1-30000000.bigWig
man/TFspecificModels.Rd man/addCor.Rd man/addCovCor.Rd man/addCovToGR.Rd man/addInteractionSupport.Rd man/addMotifScore.Rd man/addStrandCombination.Rd man/cutoffBest10.Rd man/cutoffByTF.Rd man/getCisPairs.Rd man/getOutOfBound.Rd man/modelBest10Avg.Rd man/motif.hg19.CTCF.Rd man/motif.hg19.CTCF.chr22.Rd man/motif.hg19.CTCF.chr22.cov.Rd man/noZeroVar.Rd man/parseLoopsRao.Rd man/parseLoopsTang.Rd man/predLogit.Rd man/predLoops.Rd man/prepareCisPairs.Rd man/sevenC.Rd man/slideMean.Rd
sevenC.Rproj
tests/testthat.R tests/testthat/test-interaction.R tests/testthat/test-parseChIP-seq.R tests/testthat/test-parseInteractions.R tests/testthat/test-prediction.R vignettes/sevenC.Rmd
vignettes/sevenC.bib
ibn-salem/chromloop documentation built on May 18, 2019, 1:29 a.m.