Man pages for icarda-git/QBMS
Query the Breeding Management System(s)
| brapi_get_call | Internal Function for Core BrAPI GET Calls |
| brapi_headers | Generate Common HTTP Headers for API Requests |
| brapi_map | BrAPI Mapping Table |
| brapi_post_search_allelematrix | Internal Function Used for Core BrAPI POST Calls (Allele... |
| brapi_post_search_call | Internal Function Used for Core BrAPI POST Calls |
| build_pedigree_table | Building Pedigree Table Recursively |
| calc_biovars | Calculate the Bioclimatic Variables |
| debug_qbms | Debug Internal QBMS Status Object |
| get_async_page | Asynchronously Fetch a Single API Page |
| get_async_pages | Asynchronously Fetch Multiple API Pages |
| get_brapi_url | Get the BrAPI Endpoint URL for a given QBMS function |
| get_germplasm_attributes | Retrieve Attributes for a Specified Germplasm |
| get_germplasm_data | Retrieve Observations Data for a Specified Germplasm. |
| get_germplasm_id | Get Germplasm ID for a Specified Germplasm Name |
| get_germplasm_list | Get the Germplasm List of the Current Active Study |
| get_hwsd2 | Get HWSD v2 Soil Data for a Given Location(s) |
| get_login_details | Login Pop-Up Window |
| get_parents | Get Direct Parents |
| get_pedigree_table | Get the Pedigree Table |
| get_program_studies | Get the List of Trials, Studies, and Locations Information... |
| get_program_trials | Retrieve the List of Trials for the Active Breeding Program |
| get_qbms_connection | Get the QBMS Connection |
| get_study_data | Get the Observations Data of the Current Active Study |
| get_study_info | Get the Details/Metadata of the Current Active Study |
| get_terraclimate | Get TerraClimate Data for a Given Coordinate(s) |
| get_trial_data | Get the Observations Data of the Current Active Trial |
| get_trial_obs_ontology | Get the Traits Ontology/Metadata of the Current Active Trial |
| gigwa_get_allelematrix | Get Markers Matrix in the Selected GIGWA Run |
| gigwa_get_markers | Get Markers Map in the Selected GIGWA Run |
| gigwa_get_metadata | Get the Metadata of the Current Active GIGWA Run |
| gigwa_get_samples | Get the Samples List of the Current Active GIGWA Project |
| gigwa_get_sequences | Get the Sequences of the Current Active GIGWA Project |
| gigwa_get_variants | Get Available Variants in the Selected GIGWA Run |
| gigwa_list_dbs | List GIGWA Databases |
| gigwa_list_projects | Get the List of All Projects in the Selected GIGWA Database |
| gigwa_list_runs | Get the List of the Run Names Available in the Selected GIGWA... |
| gigwa_set_db | Set the Current Active GIGWA Database by Name |
| gigwa_set_project | Set the Current Active GIGWA Project |
| gigwa_set_run | Set the Current Active GIGWA Run |
| ini_hwsd2 | Download and Setup HWSD v2.0 Data Files to Extract their Data... |
| ini_terraclimate | Download TerraClimate netCDF Data Files to Extract their Data... |
| list_crops | Retrieve Supported Crops from the Server |
| list_locations | Get the List of Locations Information of the Current Selected... |
| list_programs | Retrieve Breeding Programs for the Active Crop |
| list_studies | Get the List of Studies in the Current Active Trial |
| list_trials | List Trials in the Current Active Breeding Program |
| login_bms | Login to the Server |
| login_breedbase | Login to the BreedBase Server |
| login_gigwa | Login to the GIGWA Server |
| login_oauth2 | Login using OAuth 2.0 Authentication |
| rbindlistx | Make One Data.Table from a List of Many |
| rbindx | Combine Data Frames by Row, Filling in Missing Columns |
| scan_brapi_endpoints | Scan BrAPI Endpoints |
| set_crop | Set the Current Active Crop |
| set_program | Set the Current Active Breeding Program |
| set_qbms_config | Configure BMS Server Settings |
| set_qbms_connection | Set the QBMS Connection |
| set_study | Set the Current Active Study |
| set_token | Set Access Token Response |
| set_trial | Set the Current Active Trial |
