gigwa_get_sequences: Get the Sequences of the Current Active GIGWA Project
In icarda-git/QBMS: Query the Breeding Management System(s)

gigwa_get_sequences

R Documentation

Get the Sequences of the Current Active GIGWA Project

Description

Retrieve the list of sequences (e.g., chromosomes) associated with the currently active project in GIGWA, which has been set using the 'gigwa_set_project()' function.

Usage

gigwa_get_sequences()

Value

A vector of sequence names (e.g., chromosome names) for the selected project.

Author(s)

Khaled Al-Shamaa, k.el-shamaa@cgiar.org

Examples

if (interactive()) {
  set_qbms_config("https://gigwa.southgreen.fr/gigwa/", 
                  time_out = 300, engine = "gigwa", no_auth = TRUE)
  gigwa_set_db("Sorghum-JGI_v1")
  gigwa_set_project("Nelson_et_al_2011")
  chroms <- gigwa_get_sequences()
}

icarda-git/QBMS documentation built on Sept. 25, 2024, 10:45 p.m.