runVocabChecks: Runs vocabulary checks on a dataset

In ices-tools-prod/icesDatsuQC: Run Quality Checks on Data Prior to Submission to ICES

Runs vocabulary checks on a dataset

Description

Check vocabularies in a data set against the ICES DATSU data submission utility, the user must supply a dataset version and record type.

Usage

runVocabChecks(filename, datasetverID, recordType)

Arguments

filename	the filename of the file to check
datasetverID	the dataset ID
recordType	string name of the record type

Value

The list of vocabulary errors. Every line that failed is reported for each field.

Examples

## Not run: 
filename <- system.file("test_files/vms_test.csv", package = "icesDatsuQC")
vc <- runVocabChecks(filename, 145, "VE")
if (length(vc) > 0) {
  library(icesDatsu)
  data <-
    read.csv(
      filename,
      header = FALSE,
      col.names = getDataFieldsDescription(145, "VE")$fieldcode
  )
  # some invalid entries
  data[vc[[1]], names(vc)[1]]
}

## End(Not run)

ices-tools-prod/icesDatsuQC documentation built on Oct. 27, 2024, 5 a.m.