Man pages for idc9/r_jive
Angle Based Joint and Individual Variation Explained
| ajive | ajive: Angle based Joint and Individual Variation Explained. |
| data_blocks_heatmap | Heatmaps of several data blocks. |
| data_heatmap | Heatmap of a single data matrix. |
| decomposition_heatmaps | Heatmaps of JIVE decomposition of several blocks. |
| get_block_full | Returns one of the full JIVE decomposition matrices. |
| get_block_loadings | AJIVE loadings |
| get_block_scores | Returns the AJIVE block scores. |
| get_common_normalized_scores | Returns the common normalized scores. |
| get_final_decomposition | Computes the final JIVE decomposition. |
| get_individual_decomposition | Computes the individual matix for a data block. |
| get_individual_rank | Individual rank of block k. |
| get_joint_decomposition | Computes the joint matix for a data block. |
| get_joint_rank | Joint rank. |
| get_joint_scores | Computes the joint scores. |
| get_random_direction_bound | Estimate the wedin bound for a data matrix. |
| get_svd | Singluar Value Decomposition. |
| get_sv_threshold | The singular value threshold. |
| get_wedin_bound_samples | Esimates the wedin bound for a data matrix with the... |
| plot_blocks_grid | Makes a plot for each block in a hotizontal grid. |
| sample_toy_data | Samples toy two block JIVE data. |
| scree_plot | Scree plot |
| scree_plot_blocks | Shows the scree plot for each data block. |
| svd_reconstruction | Reconstruces the original matrix from its SVD. |
| truncate_svd | Truncates an SVD. |
| wedin_bound_resampling | Resampling procedure for the wedin bound |
