View source: R/Timecourse-NONE.R
This function handles (1) normalizing the Time-course metabolomic data without QCSs and ISs using 168 methods/strategies, (2) evaluating the normalization performances from multiple perspectives, and (3) enabling the systematic comparison among all methods/strategies based on a comprehensive performance ranking.
1 | nortimecoursenoall(fileNameC, assum_a="Y", assum_b="Y", assum_c="Y")
|
fileNameC |
Please find the detail information of the file format from those six sample files in the working directory (in github) “idrblab/METNOR/data” |
assum_a |
all proteins were assumed to be equally important.The authors will be asked to input a letter “Y” to indicate the corresponding assumption is held for the studied dataset and a letter “N” to denote the opposite. |
assum_b |
The level of protein abundance was assumed to be constant among all samples. The authors will be asked to input a letter “Y” to indicate the corresponding assumption is held for the studied dataset and a letter “N” to denote the opposite. |
assum_c |
The intensities of the vast majority of the proteins were assumed to be unchanged under the studied conditions. The authors will be asked to input a letter “Y” to indicate the corresponding assumption is held for the studied dataset and a letter “N” to denote the opposite. |
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