LPEseq.matrans: A function performing MA transformation of data without...
In iedenkim/LPEseq: LPEseq: local-pooled-error test for RNA-seq data with a small number of replicates
Description
Usage
Arguments
Details
Value
Author(s)
References
Examples
Description
A function performing MA transformation of data without replicate. This is a internal function used in LPEseq.var().
Usage
1
LPEseq.matrans(dat)
Arguments
dat
expression data with non-replicate per each condition
Details
See the reference paper
Value
matrix
MA matrix
Author(s)
Jungsoo Gim
References
J. Gim and T. Park, PLoS ONE under revision (http://bibs.snu.ac.kr/software/LPEseq)
Examples
1
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5
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8
## Generating a non-replicated simulation dataset
simData.norep <- generateData(n.deg=1000, n.rep=1)
## Normalization
normData.norep <- LPEseq.normalise(simData.norep[,-3])
## MA transformation
MAdata.norep <- LPEseq.matrans(normData.norep)
iedenkim/LPEseq documentation built on May 27, 2019, 7:26 a.m.
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Description Usage Arguments Details Value Author(s) References Examples
Description
A function performing MA transformation of data without replicate. This is a internal function used in LPEseq.var().
Usage
1 | LPEseq.matrans(dat)
|
Arguments
dat |
expression data with non-replicate per each condition |
Details
See the reference paper
Value
matrix |
MA matrix |
Author(s)
Jungsoo Gim
References
J. Gim and T. Park, PLoS ONE under revision (http://bibs.snu.ac.kr/software/LPEseq)
Examples
1 2 3 4 5 6 7 8 | ## Generating a non-replicated simulation dataset
simData.norep <- generateData(n.deg=1000, n.rep=1)
## Normalization
normData.norep <- LPEseq.normalise(simData.norep[,-3])
## MA transformation
MAdata.norep <- LPEseq.matrans(normData.norep)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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