API for iferres/mirecipe
| Global functions | |
|---|---|
| align | Source code |
| alignCoreClusters | Source code |
| buildCoreGenome | Source code |
| checkDependencies | Source code |
| extractCoreClusters | Source code |
| extractCoreLCBs | Source code |
| getCoreClusters | Source code |
| getGffSeqs | Source code |
| getGffTable | Source code |
| gubbins | Source code |
| mafft | Source code |
| overlap | Source code |
| pcSharedGenome | Source code |
| plot.progressiveMauve | Source code |
| plot.roary | Source code |
| progressiveMauve | Source code |
| prokka | Source code |
| readGff | Source code |
| readLCBS | Source code |
| readRoaryClusters | Source code |
| roary | Source code |
| summary.progressiveMauve | Source code |
| summary.prokka | Source code |
| summary.roary | Source code |
