Global functions | |
---|---|

align | Source code |

alignCoreClusters | Source code |

buildCoreGenome | Source code |

checkDependencies | Source code |

extractCoreClusters | Source code |

extractCoreLCBs | Source code |

getCoreClusters | Source code |

getGffSeqs | Source code |

getGffTable | Source code |

gubbins | Source code |

mafft | Source code |

overlap | Source code |

pcSharedGenome | Source code |

plot.progressiveMauve | Source code |

plot.roary | Source code |

progressiveMauve | Source code |

prokka | Source code |

readGff | Source code |

readLCBS | Source code |

readRoaryClusters | Source code |

roary | Source code |

summary.progressiveMauve | Source code |

summary.prokka | Source code |

summary.roary | Source code |

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