Description Usage Arguments Value
Compute Pfam-A domain content dissimilarity between two or more proteomes.
1 | domAbundance(fastas, pfamA, cut = "ga", cpus = 1L)
|
fastas |
A |
pfamA |
|
cut |
Parameter controlling model-specific thresholding. Can be ethier
|
cpus |
|
distMethod |
Dissimilarity index, partial match to "manhattan", "euclidean", "canberra", "bray" (DEFAULT), "kulczynski", "jaccard", "gower", "altGower", "morisita", "horn", "mountford", "raup" , "binomial", "chao", "cao" or "mahalanobis". See vegdist for more information. |
A list
object. The first element is the abundance matrix and
the second is the dist
matrix.
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