iferres/simba: simurg: Simulate Bacterial Pangenomes

This package is intended to simulate a bacterial pangenome, given an initial MRCA, a number of generations, a substitution rate, a gene gain and gene loss rate, and a coalescent tree. Mutations are simulated according to a substitution matrix (neutral by default), and gene gain/loss rate resembling the Infinite Many Genes model.

Getting started

Package details

LicenseGPL-3 + file LICENSE
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
iferres/simba documentation built on July 31, 2019, 10:25 a.m.