iferres/simba: simurg: Simulate Bacterial Pangenomes
This package is intended to simulate a bacterial pangenome, given an initial MRCA, a number of generations, a substitution rate, a gene gain and gene loss rate, and a coalescent tree. Mutations are simulated according to a substitution matrix (neutral by default), and gene gain/loss rate resembling the Infinite Many Genes model.
Getting started
Browse package contents
Package details |
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| Maintainer | <iferres@pasteur.edu.uy> |
| License | GPL-3 + file LICENSE |
| Version | 0.2.1 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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