msigdbr-package: msigdbr: MSigDB Gene Sets for Multiple Organisms in a Tidy...

In igordot/msigdbr: MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format

msigdbr: MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format

Description

Provides the 'Molecular Signatures Database' (MSigDB) gene sets typically used with the 'Gene Set Enrichment Analysis' (GSEA) software (Subramanian et al. 2005 \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1073/pnas.0506580102")}, Liberzon et al. 2015 \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1016/j.cels.2015.12.004")}, Castanza et al. 2023 \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1038/s41592-023-02014-7")}) as an R data frame. The package includes the human genes as listed in MSigDB as well as the corresponding symbols and IDs for frequently studied model organisms such as mouse, rat, pig, fly, and yeast.

Author(s)

Maintainer: Igor Dolgalev [e-mail] (ORCID)

See Also

Useful links:

• https://igordot.github.io/msigdbr/

• Report bugs at https://github.com/igordot/msigdbr/issues

igordot/msigdbr documentation built on March 5, 2025, 8:42 p.m.