Description Usage Arguments Value Examples
This function use locfdr function to calculate fdr_result
1 | gene_fdrtest(gene.data)
|
gene.data |
gene_id_all: gene id t_data: t statistic for each gene |
return fdr_result for t_data
fdr$name |
all gene id |
fdr$fdr |
fdr value for gene |
1 2 3 4 5 6 7 8 | ## Not run:
simulation <- init_simulation_gene_net()
t_data = DNLC_statistics(simulation$gene_graph, simulation$gene_expr,
simulation$patient_matrix, lmi_data=simulation$lmi_matrix)
fdr_result <- gene_fdrtest(t_data)
sig_genes <- significant_genes(fdr_obj = fdr_result, thres = 0.2)
## End(Not run)
|
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