readH5AD: Read an .h5ad file and create a 'SingleCellExperiment'.
In ilia-kats/MuData: Serialization for MultiAssayExperiment Objects
readH5AD R Documentation
Read an .h5ad file and create a SingleCellExperiment.
Description
In file-backed mode, the main X matrix is not read into memory,
but references the HDF5 file and its required parts are read on demand.
This requires the HDF5Array package to be installed.
Usage
readH5AD(file, backed = FALSE)
Arguments
file
Path to the .h5ad file.
backed
Whether to use file-backed mode.
Value
A SingleCellExperiment.
Examples
data(miniACC, package="MultiAssayExperiment")
writeH5AD(miniACC[[1]], "miniacc.h5ad")
sce <- readH5AD("miniacc.h5ad")
ilia-kats/MuData documentation built on Oct. 20, 2023, 8:54 p.m.
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| readH5AD | R Documentation |
Read an .h5ad file and create a SingleCellExperiment.
Description
In file-backed mode, the main X matrix is not read into memory,
but references the HDF5 file and its required parts are read on demand.
This requires the HDF5Array package to be installed.
Usage
readH5AD(file, backed = FALSE)
Arguments
file |
Path to the .h5ad file. |
backed |
Whether to use file-backed mode. |
Value
A SingleCellExperiment.
Examples
data(miniACC, package="MultiAssayExperiment")
writeH5AD(miniACC[[1]], "miniacc.h5ad")
sce <- readH5AD("miniacc.h5ad")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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