plotgroups.boxplot: Plot several groups of repeated observations as a boxplot...
In ilia-kats/imisc: miscellaneous functions

This is intended to be called from plotgroups.

1	plotgroups.boxplot

list of functions plot, ylim, features plot accepts the following parameters:

data

list, each element is a vector of replicates for one combination of parameters

at

numeric vector giving the X locations where the plots should be drawn

stats

list containing the summary statistics (see plotgroups)

colors

colors for plotting

features

the features to plot.

barwidth

width of the individual bars/boxes etc. as fraction of 1

swarm

whether to overplot the boxplot with a beeswarm plot

swarmcols

color of the beeswarm points

beeswarmpars

additional parameters passed to plotgroups.beeswarm

...

additional parameters passed to boxplot as .... Can also contain the following:

meanlty, meanlwd, meancol, meanpch, meancex: Mean line type, line width, color, point character, and point size expansion. The default meanpch=NA suppresses the point, and meanlty="blank" does so for the line. Note that meanlwd defaults to 3x the default lwd and meancol defaults to "red"
sdwhisklty, sdwhisklwd, sdwhiskcol: Whisker line type(default: "solid"), width, and color for standard deviation whiskers.
sdstaplelty, sdstaplelwd, sdstaplecol, sdstaplewex: Staple (end of whisker) line type, width, color (default: black), and length of standard deviation whiskers
semwhisklty, semwhisklwd, semwhiskcol: Whisker line type(default: "solid"), width, and color (default: "#EDA217") of standard error of the mean whiskers.
semstaplelty, semstaplelwd, semstaplecol, semstaplewex: Staple (end of whisker) line type, width, color (default: "#090E97"), and length of standard error of the mean whiskers
cistaplelty, cistaplelwd, cistaplecol, cistaplewex: Staple (end of whisker) line type, width, color (default: "#EDA217"), and length of confidence interval whiskers