ModelSearch: Allows user to search provided models for CpG sites that are...

Description Usage Arguments Value Examples

View source: R/ModelSearch.R

Description

Allows user to search provided models for CpG sites that are associated with expression of genes in any of the cancer models.

Usage

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ModelSearch(features, Cancer = object)

Arguments

features

CpG sites to be identified in the model of choice

Cancer

ExperimentHub object cancer model

Value

data.frame containing all instance of CpG sites in models. CpG.site The CpG site included in the model and if it has race specific effects Weight The weight of the CpG site on the expression of the gene Ensembl.ID The Ensembl ID Chromosome The chromosome of the gene TSS The transcription start site of the gene TES The transcription end site of the gene Gene The gene name Overall.D2 The prediction accuracy for the race interaction model EA.D2 The European American specific prediction accuracy AA.D2 The African American specific prediction accuract

Examples

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library(ExperimentHub)
eh = ExperimentHub()
x <- query(eh, 'EpiXprS')
Cancer <- x[["EH6022"]]
ModelSearch('cg21837192', Cancer = Cancer)

iloveless1/EPIExPRS documentation built on Dec. 20, 2021, 6:55 p.m.