prepare: Prepare CpG sites and expression for modeling

Description Usage Arguments Value

View source: R/Helpers.R

Description

Prepare CpG sites and expression for modeling

Usage

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prepare(
  Counts = Counts,
  Methy = Methy,
  Methylation.Annotation = Methylation.Annotation,
  annotated_RNA = annotated_RNA,
  idx = idx,
  dist
)

Arguments

Counts

A matrix of RNA counts

Methy

A matrix of Methylation M-values

Methylation.Annotation

A GRanges object containing CpG site locations. must have same order as Methy

annotated_RNA

A GRanges object containing RNA annotation. Must have same order as Counts

Value

A list containing the prepared methylation and RNA


iloveless1/methylXprs documentation built on Dec. 20, 2021, 6:56 p.m.