get_mhcpan_input: Get format for NetMHCpan tools
In imkeller/immunotation: Tools for working with diverse immune genes
View source: R/nomenclature_queries.R
get_mhcpan_input R Documentation
Get format for NetMHCpan tools
Description
NetMHCpan tools for MHC-peptide binding prediction require
HLA complex names in a specific format. get_mhcpan_input formats a
list of HLA alleles into a list of NetMHC-formated complexes.
Usage
get_mhcpan_input(allele_list, mhc_class)
Arguments
allele_list
list of HLA alles (e.g. c("A*01:01:01","B*27:01"))
mhc_class
["MHC-I"|"MHC-II"] indicated which NetMHC you want to use.
Value
protein chain list as formatted for MHCpan input
Examples
allele_list <- c("A*01:01:01","B*27:01")
get_mhcpan_input(allele_list, mhc_class = "MHC-I")
imkeller/immunotation documentation built on Jan. 3, 2023, 1:31 p.m.
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View source: R/nomenclature_queries.R
| get_mhcpan_input | R Documentation |
Get format for NetMHCpan tools
Description
NetMHCpan tools for MHC-peptide binding prediction require
HLA complex names in a specific format. get_mhcpan_input formats a
list of HLA alleles into a list of NetMHC-formated complexes.
Usage
get_mhcpan_input(allele_list, mhc_class)
Arguments
allele_list |
list of HLA alles (e.g. c("A*01:01:01","B*27:01")) |
mhc_class |
["MHC-I"|"MHC-II"] indicated which NetMHC you want to use. |
Value
protein chain list as formatted for MHCpan input
Examples
allele_list <- c("A*01:01:01","B*27:01")
get_mhcpan_input(allele_list, mhc_class = "MHC-I")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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