kinematic_analysis: Perform the kinematic analysis.

In impres-lab/leafkin: Leaf kinematic analysis in R

Perform the kinematic analysis.

Description

Combines calculated leaf elongation rates, fitted cell sizes and meristem sizes to perform a kinematic analysis, resulting in data about cell division and cell elongation.

Usage

kinematic_analysis(LER_means, tidy_cell_lengths, meristem_size_micrometre)

Arguments

LER_means	contains a tidy tibble with the previoulsy calculated mean leaf elongation rates for each plant.
tidy_cell_lengths	contains a tidy tibble with the previously fitted cell lengths for each plant.
meristem_size_micrometre	contains a tidy tibble with the meristem sizes in micrometre for each plant.

Details

This function takes in the data generated by calculate_LER, get_all_fitted_cell_lengths and a data.frame or tibble containing the meristem size of each plant involved in the microscopy analysis. The first column of the meristem size file should contain plant_id's and should be named exactly plant_id. The second column should contain meristem sizes in micrometre and should be named exactly mer_length_um. It are these column names that the function will look for and use to select the data.

Value

A tidy tibble, containing all calculated kinematic parameters.

Author(s)

Jonas Bertels

impres-lab/leafkin documentation built on Aug. 5, 2022, 5:20 a.m.