options: Set and get global options for INLA

In inbo/INLA: Full Bayesian Analysis of Latent Gaussian Models using Integrated Nested Laplace Approximations

Description

Set and get global options for INLA

Usage

 inla.setOption(...)
 inla.getOption(option)
 

Arguments

...

Option and value, like option=value or option, value; see the Examples

option

The option to get. If option = NULL then inla.getOption then inla.getOption will return a named list of current values, otherwise, option must be one of inla.call: The path to the inla-program. inla.arg: Additional arguments to inla.call fmesher.call: The path to the fmesher-program fmesher.arg: Additional arguments to fmesher.call num.threads: Number of threads to use. blas.num.threads: Number of threads to use for openblas and mklblas (see inla for details) smtp: Sparse matrix library to use, one of band, taucs (default) or pardiso mkl: Use binaries buildt with Intel MKL? (If possible) pardiso.license: The full path to the PARDISO license file keep: Keep temporary files? working.directory: The name of the working directory. silent: Run the inla-program in a silent mode? debug : Run the inla-program in a debug mode? internal.binary.mode : if FALSE the (some) output are in ascii format instead of binary format. Using this option, then inla.collect.results will fail (Expert mode) internal.experimental.mode : Expert option cygwin : The home of the Cygwin installation (default "C:/cygwin") [Remote computing for Windows only] ssh.auth.sock: The ssh bind-adress (value of $SSH_AUTH_SOCK int the Cygwin-shell). [Remote computing for Windows only] enable.inla.argument.weights : if TRUE the inla accepts argument weights show.warning.graph.file : Give a warning for using the obsolete argument graph.file instead of graph scale.model.default : The default value of argument scale.model which optionally scale intrinisic models to have generalized unit average variance short.summary : Use a less verbose output for summary. Useful for Markdown documents.

Author(s)

Havard Rue [e-mail]

Examples

 ## set number of threads
 inla.setOption("num.threads", 2)
 ## alternative format
 inla.setOption(num.threads=2)
 ## check it
 inla.getOption("num.threads")

inbo/INLA documentation built on Dec. 6, 2019, 9:51 a.m.